PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003969.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 530aa MW: 57272.4 Da PI: 8.8013

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003969.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.6	1.1e-32	244	300	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dD ynWrKYGqK vkgsefprsYY+Ct+ +Cpvkkkvers ++++ei+Y+g+Hnhe PCP003969.1 244 DDSYNWRKYGQKLVKGSEFPRSYYKCTHMNCPVKKKVERSP-SGEITEIIYKGQHNHE 300 8**************************************.9************8 PP
2	WRKY	104.9	4.4e-33	416	474	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+++d k+v++tYeg+Hnh+ PCP003969.1 416 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFVGCNVRKHVERASTDAKAVITTYEGKHNHD 474 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MTAKTQGSNR VTVSAPPPQH QPQRPVITLP PRPSAEAFFS GGSGASPGPM TLVSSFFETY 60 PESDFRSFSQ LLAGAMGSPV GSTRGMSFFS DNPADGLGKS GGGSEYGGEG SSGFKQSRPM 120 SLAVARPPLF TVPPGLSSSG LLNSPGFYSP QSPFGMSHQQ ALAQVTAQAA LAQSRVYMQP 180 DYQPSSVAAP TEPQACQPSL MPEEASRQLT LSSTSDTKSS VRQSLEASHS DGKYQPSSTD 240 RPADDSYNWR KYGQKLVKGS EFPRSYYKCT HMNCPVKKKV ERSPSGEITE IIYKGQHNHE 300 VPQPSKRPKD GDLNGPKPEN GLQRRVGDSN RLSENVASHS QPERDKESTE AASGQLLGGS 360 DNEELGDGET REGGDADEPN AKRRNIDVGA SEVALPQKMV TEPKIIVQTR SEVDLLDDGY 420 RWRKYGQKVV KGNPHPRSYY KCTFVGCNVR KHVERASTDA KAVITTYEGK HNHDVPAARN 480 SSHSTANNSA SQLKPPASGA PQHTLLKGRE YGNNDQRPVL LQLKEEQIVV

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MTAKTQGSNR VTVSAPPPQH QPQRPVITLP PRPSAEAFFS GGSGASPGPM TLVSSFFETY  60
PESDFRSFSQ LLAGAMGSPV GSTRGMSFFS DNPADGLGKS GGGSEYGGEG SSGFKQSRPM  120
SLAVARPPLF TVPPGLSSSG LLNSPGFYSP QSPFGMSHQQ ALAQVTAQAA LAQSRVYMQP  180
DYQPSSVAAP TEPQACQPSL MPEEASRQLT LSSTSDTKSS VRQSLEASHS DGKYQPSSTD  240
RPADDSYNWR KYGQKLVKGS EFPRSYYKCT HMNCPVKKKV ERSPSGEITE IIYKGQHNHE  300
VPQPSKRPKD GDLNGPKPEN GLQRRVGDSN RLSENVASHS QPERDKESTE AASGQLLGGS  360
DNEELGDGET REGGDADEPN AKRRNIDVGA SEVALPQKMV TEPKIIVQTR SEVDLLDDGY  420
RWRKYGQKVV KGNPHPRSYY KCTFVGCNVR KHVERASTDA KAVITTYEGK HNHDVPAARN  480
SSHSTANNSA SQLKPPASGA PQHTLLKGRE YGNNDQRPVL LQLKEEQIVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-107	WRKY family protein