PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP003801.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 327aa    MW: 37049.4 Da    PI: 6.6323
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP003801.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.31.1e-0937107879
     trihelix   8 laLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                  l L++ +  +e +  ++ +  ++W+ +++++++ g++r+  q + kwe l  +yk ik++e k ++ +s  +
  PCP003801.1  37 LILVNEVAAVEGDCLKALSSFQKWKIIAQNCSALGVSRTLDQYRRKWEALFSEYKGIKQWEAKSRASDS-YW 107
                  5566666677777777778889****************************************9754444.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MKPEQTPSQL DRSHRSSGNR RSTRSQAAPD WNPTDELILV NEVAAVEGDC LKALSSFQKW  60
KIIAQNCSAL GVSRTLDQYR RKWEALFSEY KGIKQWEAKS RASDSYWVLG IERRKRNGLP  120
ENFDQELFRG IDKLVRVRGN QSDTDPDSDP EDEAEAEPEE EPDVDSEPES KRRRRRSTSQ  180
KSCPRENSIR SCKIEKPQET HAEGKPQKTH AEEKPVGSGL KAIPPKSLAE EHPQKSCVKK  240
KLTNSQRKEE AISIEEQEKI AAMKLHESAD LIRAIVTEKP DHEAAGVKST GDLQTDFVRC  300
QGDRVIACLG DIVKTLDQLR HLVQECE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176KRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.14e-52Trihelix family protein