PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003797.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 924aa MW: 101144 Da PI: 5.4749

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003797.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3e-08	68	95	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC+ff+r tC +G+ C++aHg+ PCP003797.1 68 WKTSLCSFFRREAkTCGHGSECRYAHGE 95 8********99***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence
MSSTPTAEPS VTQLLNSPSP LNGHDSTDQP QPPQDPATQP PDDAVSGDKR KREENDDVPN 60 PSAKPPLWKT SLCSFFRREA KTCGHGSECR YAHGESELRP RPDNTWDPTS ERAKKQKLEE 120 EIEECVALDN VMMTEAVDDD GDGDSDAGGL DPELSKCLGV EFKSAKKKKG MALGFVSFEN 180 AEQLQTAVKE LEGISIGNKV MKVADVIPRS FEKRTKSILA PRIPGVGLDG ENVEDSMTAN 240 GAEDGDGTTG RSARKVVTPL AHMSYDDQLD HKKSSLMQIL KRLTRNARKA CPDGIPLPEW 300 IVKSRELGGL PCGLEGILAS PVVKGYRNKC EFSVGYSLQG KITVGFMLGN FREGVTAVEE 360 PFDCPNVSRI SSEYASIFQE FLQNSSLPIW NRFKNIGFWR QLTVREGRRP GIATDSEHCE 420 SNIAEVMLIV QVSSSGFDDT HITSEYERLA QAFAAGATGS SPALPLTFLV IQDHQGISNA 480 APADAPLHSL SIPKAEGGSE KQAADSVVEP KIHDYINNLK FCISPTAFFQ VNTPAAEKLY 540 SLAGDWAQLG PDTLLFDVCC GTGTIGLTLA HRVGMVVGIE MNASAVSDAR RNAEINDIKN 600 CRFVCAKAED VMRSLLEEYS IASQKQDDNV SEGSDKVIVT KDEKAISMDN KPNPEENSSH 660 ELENGNTASE GLEIDKQEVK SQPHSSCTSE KGKTPVNCFS NVVAIVDPPR NGLHPTVIKA 720 LRTHADLRKL VYISCNPETL VANAIELCTP SPEKIDKNKN NRAWRNMGSA GLARHRTKSM 780 PASEPFRPGY EVKNEEVYKV KSVKWRDKFN QQRIIEPVLK EFPIEPQPIV ATRSLSEMSP 840 SSSLKGKAKS SKSSSSKEKA ARLEDLVQQL LAQAARLQAQ FNSKEKDDQA YESSDASSQH 900 PVKPEPNSQS TRWVNYQDAQ DPFA

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence

MSSTPTAEPS VTQLLNSPSP LNGHDSTDQP QPPQDPATQP PDDAVSGDKR KREENDDVPN  60
PSAKPPLWKT SLCSFFRREA KTCGHGSECR YAHGESELRP RPDNTWDPTS ERAKKQKLEE  120
EIEECVALDN VMMTEAVDDD GDGDSDAGGL DPELSKCLGV EFKSAKKKKG MALGFVSFEN  180
AEQLQTAVKE LEGISIGNKV MKVADVIPRS FEKRTKSILA PRIPGVGLDG ENVEDSMTAN  240
GAEDGDGTTG RSARKVVTPL AHMSYDDQLD HKKSSLMQIL KRLTRNARKA CPDGIPLPEW  300
IVKSRELGGL PCGLEGILAS PVVKGYRNKC EFSVGYSLQG KITVGFMLGN FREGVTAVEE  360
PFDCPNVSRI SSEYASIFQE FLQNSSLPIW NRFKNIGFWR QLTVREGRRP GIATDSEHCE  420
SNIAEVMLIV QVSSSGFDDT HITSEYERLA QAFAAGATGS SPALPLTFLV IQDHQGISNA  480
APADAPLHSL SIPKAEGGSE KQAADSVVEP KIHDYINNLK FCISPTAFFQ VNTPAAEKLY  540
SLAGDWAQLG PDTLLFDVCC GTGTIGLTLA HRVGMVVGIE MNASAVSDAR RNAEINDIKN  600
CRFVCAKAED VMRSLLEEYS IASQKQDDNV SEGSDKVIVT KDEKAISMDN KPNPEENSSH  660
ELENGNTASE GLEIDKQEVK SQPHSSCTSE KGKTPVNCFS NVVAIVDPPR NGLHPTVIKA  720
LRTHADLRKL VYISCNPETL VANAIELCTP SPEKIDKNKN NRAWRNMGSA GLARHRTKSM  780
PASEPFRPGY EVKNEEVYKV KSVKWRDKFN QQRIIEPVLK EFPIEPQPIV ATRSLSEMSP  840
SSSLKGKAKS SKSSSSKEKA ARLEDLVQQL LAQAARLQAQ FNSKEKDDQA YESSDASSQH  900
PVKPEPNSQS TRWVNYQDAQ DPFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein