PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003782.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 723aa MW: 79415.5 Da PI: 7.8202

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003782.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.2	6.4e-23	114	215	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +++ PCP003782.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfpkldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSIFVNQKKLVAGDSIVFL--RAENGD 207 89**************************996555545..8********************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ PCP003782.1 208 LCVGIRRA 215 9**997 PP
2	Auxin_resp	111	1.2e-36	289	372	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fe vY+Prast+eF+vk++ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+ ++p+ WpnS+Wr+L+ PCP003782.1 289 AATTAANGQPFEAVYYPRASTPEFCVKASAVRAAMRVQWCSGMRFKMAFETEDSSRISWfMGTISSVQVANPICWPNSPWRLLQ 372 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MKESEKILDP QLWHACAGGM VHMPPVNSKV FYFPQGHAEH AQSGGGVDFS AASLRIPSLV 60 LCRVAAIKFM ADLETDEVFA KIRMNPIENS EAFATEDGDT EADGSENQEK PGSFAKTLTQ 120 SDANNGGGFS VPRYCAETIF PKLDYSADPP VQTVIAKDVH GEVWKFRHIY RGTPRRHLLT 180 TGWSIFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGLD GGGGNEVASG WNNSHSSGGG 240 SGDYVLPYGG FSVFLREEDN KKRNGGGNLS PNGNMRGKGR VRPESVVEAA TTAANGQPFE 300 AVYYPRASTP EFCVKASAVR AAMRVQWCSG MRFKMAFETE DSSRISWFMG TISSVQVANP 360 ICWPNSPWRL LQVTWDEPDL LQNVKCVSPW LIELVSNVPM IHMSPFSSPR KKLCLPQHPD 420 FSLDRQLTLP SFSGNPLGPS SPLCCLPNNT PAGIQGARHA QFRISLSDLH LNNKLQSGLF 480 SSSFQWFDQS SRISNGIRAG HTSSNENLSC LLTMGNSSQN SEKPDNAKKH KFLLFGQPIL 540 TEQQISRSCS SEAVSQLLPG KNSKDGNQDK TKFFFNGSES ALGRQVSLEK STSVGFSRHK 600 DFQATDFDLE TGHCKVFMES EDVGRTLDLS ALCSYEELYR RLANMFEIEK PEMMSHVLYR 660 DVTGAVKQTG VETFSDFTKT AKRLTIITHP ASESIGRTWI RGMQNAENGL GATNKTGPLS 720 IFA

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MKESEKILDP QLWHACAGGM VHMPPVNSKV FYFPQGHAEH AQSGGGVDFS AASLRIPSLV  60
LCRVAAIKFM ADLETDEVFA KIRMNPIENS EAFATEDGDT EADGSENQEK PGSFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PKLDYSADPP VQTVIAKDVH GEVWKFRHIY RGTPRRHLLT  180
TGWSIFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGLD GGGGNEVASG WNNSHSSGGG  240
SGDYVLPYGG FSVFLREEDN KKRNGGGNLS PNGNMRGKGR VRPESVVEAA TTAANGQPFE  300
AVYYPRASTP EFCVKASAVR AAMRVQWCSG MRFKMAFETE DSSRISWFMG TISSVQVANP  360
ICWPNSPWRL LQVTWDEPDL LQNVKCVSPW LIELVSNVPM IHMSPFSSPR KKLCLPQHPD  420
FSLDRQLTLP SFSGNPLGPS SPLCCLPNNT PAGIQGARHA QFRISLSDLH LNNKLQSGLF  480
SSSFQWFDQS SRISNGIRAG HTSSNENLSC LLTMGNSSQN SEKPDNAKKH KFLLFGQPIL  540
TEQQISRSCS SEAVSQLLPG KNSKDGNQDK TKFFFNGSES ALGRQVSLEK STSVGFSRHK  600
DFQATDFDLE TGHCKVFMES EDVGRTLDLS ALCSYEELYR RLANMFEIEK PEMMSHVLYR  660
DVTGAVKQTG VETFSDFTKT AKRLTIITHP ASESIGRTWI RGMQNAENGL GATNKTGPLS  720
IFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein