PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003403.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 664aa MW: 73233 Da PI: 6.7497

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003403.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.6	1.1e-32	110	166	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+edp++++itYeg H h PCP003403.1 110 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSSEDPDMLIITYEGLHLH 166 8******************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence
MAATWSDGSE EELVRELLDN ESPFFVLPEE SVQSQTTSAF SKEAINRFIP NVYSGPTIQD 60 IETALSVTTG TVQPQELSNA RLSLPEGGLS KVEHKYTLKI KSCGNGIMAD DGYKWRKYGQ 120 KSIKNSPNPR SYYRCTNPRC SAKKQVERSS EDPDMLIITY EGLHLHFAYP FFDFNNQAQN 180 SSPTMKKPKK KTSEPQAEDQ DREAHESLRS VTPDPVPDLP PGPFPDRHQE FVEEERSSQG 240 LLQDMVPFMI RNPKPSSASS NSTCSSSRSS PTSSSSLSWV SSYFDNVISG TYNGRNTLLH 300 DSFPPSSTPL GNAIRRLFSS QGLGKKNYEN YYPKNKKEIP KGGEQKSASK GVPHSDFCRS 360 FPIDVFWISF QELKNKLLEL GLVDHIEVAN KSVAKVYVRS SAREKVHSDD SVRDTVNGSP 420 SEGNVTQFKY YFNIGSVQSF EEKLEEAQEA LGIDRHDFVP VIYVLFKDVA GCDEAKQEIM 480 EFVHVLKHLK KYEELGAKIP KGALLVGPPG TGKTLFAKAT AGESGVPFLS ISGSDFMEMF 540 VGVGPSRVRS LLGARQCAPS IIFIDEIDAI GRARGRGGFS GGHDEPESFV GEDFNWSAER 600 LGESDQNDLC SSCSVWLQQQ VNRGAQGADR IDCRAVAGKG SPSPRGLGSS IGRTAIQVKR 660 AHKL

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence

MAATWSDGSE EELVRELLDN ESPFFVLPEE SVQSQTTSAF SKEAINRFIP NVYSGPTIQD  60
IETALSVTTG TVQPQELSNA RLSLPEGGLS KVEHKYTLKI KSCGNGIMAD DGYKWRKYGQ  120
KSIKNSPNPR SYYRCTNPRC SAKKQVERSS EDPDMLIITY EGLHLHFAYP FFDFNNQAQN  180
SSPTMKKPKK KTSEPQAEDQ DREAHESLRS VTPDPVPDLP PGPFPDRHQE FVEEERSSQG  240
LLQDMVPFMI RNPKPSSASS NSTCSSSRSS PTSSSSLSWV SSYFDNVISG TYNGRNTLLH  300
DSFPPSSTPL GNAIRRLFSS QGLGKKNYEN YYPKNKKEIP KGGEQKSASK GVPHSDFCRS  360
FPIDVFWISF QELKNKLLEL GLVDHIEVAN KSVAKVYVRS SAREKVHSDD SVRDTVNGSP  420
SEGNVTQFKY YFNIGSVQSF EEKLEEAQEA LGIDRHDFVP VIYVLFKDVA GCDEAKQEIM  480
EFVHVLKHLK KYEELGAKIP KGALLVGPPG TGKTLFAKAT AGESGVPFLS ISGSDFMEMF  540
VGVGPSRVRS LLGARQCAPS IIFIDEIDAI GRARGRGGFS GGHDEPESFV GEDFNWSAER  600
LGESDQNDLC SSCSVWLQQQ VNRGAQGADR IDCRAVAGKG SPSPRGLGSS IGRTAIQVKR  660
AHKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	1e-46	WRKY family protein