PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002673.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 27191.6 Da PI: 9.15

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002673.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.2	1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+t+k++ey+s PCP002673.1 9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTNKMHEYIS 59 569**********************************************86 PP
2	K-box	78.8	1.4e-26	71	163	1	93
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yqk+ g +l+ +++es++ l kLk+ +++L+re+R++lG dL+ L + eL +L +++++sl iR++K++++++q+e+++kk k+l+++ + PCP002673.1 71 YQKTMGIDLWRTHHESMKDTLWKLKEINNKLRREIRQRLGHDLNGLRFDELASLDDEMQSSLDAIRQRKYHVIKTQTETTKKKVKNLEQRRGN 163 78999999*******************************************************************************998755 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TNKMHEYISP 60 TTTTKSMYDD YQKTMGIDLW RTHHESMKDT LWKLKEINNK LRREIRQRLG HDLNGLRFDE 120 LASLDDEMQS SLDAIRQRKY HVIKTQTETT KKKVKNLEQR RGNMLHGYFD QEAASEDPQY 180 GYEDNEGDYE SALALANGAN NLYTFHLHRN SDHLHHGGSS LGSSITHLHD LRLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	3e-64	MIKC_MADS family protein