PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002345.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 529aa MW: 58918.5 Da PI: 6.5849

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002345.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.6	9.8e-11	247	303	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k++g PCP002345.1 247 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 303 57*****************4444.2344336655.7799999***********98 PP
2	AP2	50.6	4.7e-16	346	397	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PCP002345.1 346 SVYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 397 78**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MAPASNWLSF SLMSPMEMLR SSESDQSPFV PYDASSAASP QYFLDNFYAS NGWQTNPKSQ 60 VFFTDGEDQR KQQGQSDSPN LSPFVDPQSH TQHIPKLEDF LGDSSSIVRY SDSQTETQDS 120 SSLTHMYDQS STYFGGDHHH HHQRQEDLKA ITGFQAFSTN SGSEVEDSTS MARTTQHQQQ 180 LACAEFGGHS IESNGNELGV YNSSCATNAL SLGVTTSQSS SDQKKAIVAV DNDGSKKIAD 240 TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QGGYDKEDKA ARAYDLAALK 300 YWGPTATTNF PVSTYSKELE DMQHMTKQEF IASLRRKSSG FSRGASVYRG VTRHHQQGRW 360 QARIGRVAGN KDLYLGTFAT EEEAAEAYDI AAIKFRGINA VTNFEMNRYD VEAIGKSSLP 420 VGGAAKRLKL SLEAEEQRPS VNHDQQHPQC SIGSNINFTS MQPVQSIPCG IPYDAAAANT 480 YYHHLFHQFQ PNYYGASDSA GLNPNVATQM SMMPQQPAEF YIWPNHQSH

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MAPASNWLSF SLMSPMEMLR SSESDQSPFV PYDASSAASP QYFLDNFYAS NGWQTNPKSQ  60
VFFTDGEDQR KQQGQSDSPN LSPFVDPQSH TQHIPKLEDF LGDSSSIVRY SDSQTETQDS  120
SSLTHMYDQS STYFGGDHHH HHQRQEDLKA ITGFQAFSTN SGSEVEDSTS MARTTQHQQQ  180
LACAEFGGHS IESNGNELGV YNSSCATNAL SLGVTTSQSS SDQKKAIVAV DNDGSKKIAD  240
TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QGGYDKEDKA ARAYDLAALK  300
YWGPTATTNF PVSTYSKELE DMQHMTKQEF IASLRRKSSG FSRGASVYRG VTRHHQQGRW  360
QARIGRVAGN KDLYLGTFAT EEEAAEAYDI AAIKFRGINA VTNFEMNRYD VEAIGKSSLP  420
VGGAAKRLKL SLEAEEQRPS VNHDQQHPQC SIGSNINFTS MQPVQSIPCG IPYDAAAANT  480
YYHHLFHQFQ PNYYGASDSA GLNPNVATQM SMMPQQPAEF YIWPNHQSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	0.0	AP2 family protein