PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002331.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 890aa MW: 100262 Da PI: 8.3832

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002331.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.7	1.7e-24	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifss+gkl+e PCP002331.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSSQGKLFEL 57 79********************************************996 PP
2	K-box	43.8	1.1e-15	95	187	7	97
K-box 7 ksleeakaeslqqelakLkkeienLq..reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ e+++ ++e++ +k+eie Lq R + + ++++l eLq Le++Le+ + ++Rs K+++l+++i+ l++ e l +nk+L+ k PCP002331.1 95 EQTMETQTLDAKKEINLMKQEIEILQkgLRYRYMFDGGAGTMTLDELQVLEKHLETWIYHVRSAKMDILFQEIQLLRNSEGILAAANKYLQDK 187 456678888999************5534466777789*************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSS QGKLFELATK 60 GSQALSTFFC TIIISMQGLI ERYMKMKPTR APQTEQTMET QTLDAKKEIN LMKQEIEILQ 120 KGLRYRYMFD GGAGTMTLDE LQVLEKHLET WIYHVRSAKM DILFQEIQLL RNSEGILAAA 180 NKYLQDKCIV SVIKIVLQFC KENSLHQTFQ TLQSECQVSL NTVDSVETFV SDINSGRWDA 240 ILPQVAQLKL PRNKLEDLYE QIVLEMIELR ELDTARAILR QTQVMGVVKQ EQPERFLRLE 300 HLLVRTYFDP NEAYQESTKE KRRAQIAQAL AAEVTVVPPS RLTALIGQAL KWQQHQGTVT 360 YVVKFGTKSH AECARFSPDG QFLVSCSVDG FIEVWDYLSG KLKKDLQYQA DETFMMHDDA 420 VLCLEFSRDS EMIASGSQDG KIKVWRIRTG QCLRRLERAH SRGVTSVSFS RDGSQLLSTS 480 FDSTAKIHGL KSGKILKEFR GHTSYVNDGI FTSDGARVIT ASSDCTVKVW DLKTTDCLQT 540 FKPPPPLRGG DASVNSVHLY PKNTDHIIVC NKTSSIYVMT LQGQVVKSFS SGKKEGGDFL 600 SACVSPKGEW IYCVGEDRNM YCFSHQSGNL EHLMKVHEKE VIGISHHPHR NIVATYADLL 660 GLPLIPAHSE ASGDQMLHGV NYASAAAGIL DATGRNFVGR IPFGQQIRNF QNTLDQITDN 720 LGADDAARSI AKCIFFVGMG SNDYLNNYLM PNYPTRNHYN AQQYADLLAQ EYTRLLTRLY 780 NLGARKFVIA GLGRLGCIPS ILARNPSGTC SDEVNRLVLP FDANVKTMIN NLNTNLPGSK 840 FIYIDIARMF EDMLLDPRTY EAKLHVFLSK HRAEIETNIS SGMHSTRPQQ

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence

MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSS QGKLFELATK  60
GSQALSTFFC TIIISMQGLI ERYMKMKPTR APQTEQTMET QTLDAKKEIN LMKQEIEILQ  120
KGLRYRYMFD GGAGTMTLDE LQVLEKHLET WIYHVRSAKM DILFQEIQLL RNSEGILAAA  180
NKYLQDKCIV SVIKIVLQFC KENSLHQTFQ TLQSECQVSL NTVDSVETFV SDINSGRWDA  240
ILPQVAQLKL PRNKLEDLYE QIVLEMIELR ELDTARAILR QTQVMGVVKQ EQPERFLRLE  300
HLLVRTYFDP NEAYQESTKE KRRAQIAQAL AAEVTVVPPS RLTALIGQAL KWQQHQGTVT  360
YVVKFGTKSH AECARFSPDG QFLVSCSVDG FIEVWDYLSG KLKKDLQYQA DETFMMHDDA  420
VLCLEFSRDS EMIASGSQDG KIKVWRIRTG QCLRRLERAH SRGVTSVSFS RDGSQLLSTS  480
FDSTAKIHGL KSGKILKEFR GHTSYVNDGI FTSDGARVIT ASSDCTVKVW DLKTTDCLQT  540
FKPPPPLRGG DASVNSVHLY PKNTDHIIVC NKTSSIYVMT LQGQVVKSFS SGKKEGGDFL  600
SACVSPKGEW IYCVGEDRNM YCFSHQSGNL EHLMKVHEKE VIGISHHPHR NIVATYADLL  660
GLPLIPAHSE ASGDQMLHGV NYASAAAGIL DATGRNFVGR IPFGQQIRNF QNTLDQITDN  720
LGADDAARSI AKCIFFVGMG SNDYLNNYLM PNYPTRNHYN AQQYADLLAQ EYTRLLTRLY  780
NLGARKFVIA GLGRLGCIPS ILARNPSGTC SDEVNRLVLP FDANVKTMIN NLNTNLPGSK  840
FIYIDIARMF EDMLLDPRTY EAKLHVFLSK HRAEIETNIS SGMHSTRPQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	1e-61	MIKC_MADS family protein