PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP002331.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 890aa MW: 100262 Da PI: 8.3832 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.7 | 1.7e-24 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifss+gkl+e PCP002331.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSSQGKLFEL 57 79********************************************996 PP | |||||||
2 | K-box | 43.8 | 1.1e-15 | 95 | 187 | 7 | 97 |
K-box 7 ksleeakaeslqqelakLkkeienLq..reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ e+++ ++e++ +k+eie Lq R + + ++++l eLq Le++Le+ + ++Rs K+++l+++i+ l++ e l +nk+L+ k PCP002331.1 95 EQTMETQTLDAKKEINLMKQEIEILQkgLRYRYMFDGGAGTMTLDELQVLEKHLETWIYHVRSAKMDILFQEIQLLRNSEGILAAANKYLQDK 187 456678888999**************5534466777789***************************************************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 890 aa Download sequence |
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSS QGKLFELATK 60 GSQALSTFFC TIIISMQGLI ERYMKMKPTR APQTEQTMET QTLDAKKEIN LMKQEIEILQ 120 KGLRYRYMFD GGAGTMTLDE LQVLEKHLET WIYHVRSAKM DILFQEIQLL RNSEGILAAA 180 NKYLQDKCIV SVIKIVLQFC KENSLHQTFQ TLQSECQVSL NTVDSVETFV SDINSGRWDA 240 ILPQVAQLKL PRNKLEDLYE QIVLEMIELR ELDTARAILR QTQVMGVVKQ EQPERFLRLE 300 HLLVRTYFDP NEAYQESTKE KRRAQIAQAL AAEVTVVPPS RLTALIGQAL KWQQHQGTVT 360 YVVKFGTKSH AECARFSPDG QFLVSCSVDG FIEVWDYLSG KLKKDLQYQA DETFMMHDDA 420 VLCLEFSRDS EMIASGSQDG KIKVWRIRTG QCLRRLERAH SRGVTSVSFS RDGSQLLSTS 480 FDSTAKIHGL KSGKILKEFR GHTSYVNDGI FTSDGARVIT ASSDCTVKVW DLKTTDCLQT 540 FKPPPPLRGG DASVNSVHLY PKNTDHIIVC NKTSSIYVMT LQGQVVKSFS SGKKEGGDFL 600 SACVSPKGEW IYCVGEDRNM YCFSHQSGNL EHLMKVHEKE VIGISHHPHR NIVATYADLL 660 GLPLIPAHSE ASGDQMLHGV NYASAAAGIL DATGRNFVGR IPFGQQIRNF QNTLDQITDN 720 LGADDAARSI AKCIFFVGMG SNDYLNNYLM PNYPTRNHYN AQQYADLLAQ EYTRLLTRLY 780 NLGARKFVIA GLGRLGCIPS ILARNPSGTC SDEVNRLVLP FDANVKTMIN NLNTNLPGSK 840 FIYIDIARMF EDMLLDPRTY EAKLHVFLSK HRAEIETNIS SGMHSTRPQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-61 | MIKC_MADS family protein |