PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002224.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 225aa MW: 25743.5 Da PI: 9.5023

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002224.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94	7e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaevaviifs+++klye++s PCP002224.1 9 KRIENAASRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKDKLYEFCS 59 79***********************************************96 PP
2	K-box	64	5.6e-22	77	158	4	84
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++++ e++ ++l++e+a + k+ie L+ +qR+llG+dL+s+ ++eLq++ +qLe+sl++iR++K +l++eq+e+l+ k PCP002224.1 77 EQTNKvEVEQHVQHLKHESAIMAKKIEILEATQRKLLGNDLDSCLVEELQEMSSQLERSLRSIRERKAQLFMEQMEQLKAKS 158 34444478999********************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MVRGKIEMKR IENAASRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KDKLYEFCSS 60 DMRDTLTRYR KYAKDHEQTN KVEVEQHVQH LKHESAIMAK KIEILEATQR KLLGNDLDSC 120 LVEELQEMSS QLERSLRSIR ERKAQLFMEQ MEQLKAKSGA KLWMEHSAQE KGASTSLSYE 180 KAGVSASVNY RSQGSMSSEV ETELFIGPPI MRAVGASQPR STYIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	2e-75	MIKC_MADS family protein