PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP002223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28852 Da PI: 7.8224 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.2 | 2.9e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs+++klye++s PCP002223.1 9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKDKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 71.7 | 2.3e-24 | 77 | 170 | 4 | 97 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++k e++ ++l++e+a + k+ie L+ +qR+llG+dL+s+ ++eLq++ +qLe+sl++iR++ +ll+eq+e+l+ ke l +en +Lr++ PCP002223.1 77 QTNKVEVEQQVQHLKHEAAIMTKKIEILEASQRKLLGNDLDSCVVEELQEISSQLERSLRSIREREAQLLMEQMENLKAKETLLLQENAKLREE 170 3444478999*********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MVRGKIEMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KDKLYEFCSS 60 DMQETLTRYH KYAKDEQTNK VEVEQQVQHL KHEAAIMTKK IEILEASQRK LLGNDLDSCV 120 VEELQEISSQ LERSLRSIRE REAQLLMEQM ENLKAKETLL LQENAKLREE SGAKLLMEHS 180 AQEKRRSASV SCEKARASAS VNCWSQSIMS SEVETELFIG PPIMRSVDRI AVYSNIHQIN 240 NNACQSSPKT IP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 1e-65 | MIKC_MADS family protein |