PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002083.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GATA

Protein Properties

Length: 570aa MW: 63630.5 Da PI: 6.6946

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002083.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	34.6	2.6e-11	44	70	9	35
GATA 9 TplWRrgpdgnktLCnaCGlyyrkkgl 35 TplWR+gp ++ LCnaCG ++r kg+ PCP002083.1 44 TPLWRNGPPDKPVLCNACGSRWRTKGT 70 9*****55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MRNYRVMSDF VYLLIALEVP MIPKIPSQSK YLYLKNDSDV NECTPLWRNG PPDKPVLCNA 60 CGSRWRTKGT LVNYTPLHAR AEPDDYEDHR VSRVKSISVN KNKEIKLVKR KQNPESVVAG 120 GVNSDYSHGF RKLTEEDTSN RSSSGSAVSN SESCAQFGSG DASDLTGPAQ SMVWDSMVPS 180 RKRTCVGRPK PSPVEKLTKD LYTILHEQQS SYFSGSSEED LLFESETPMV SVEIGHGSVL 240 IRHPNSIARE EESEASSISV DNKQCHANEA YSHSATLFVH NNNKGVNMAS TVSGRMNNLS 300 GQGMQHEPMK REKSQLDNLQ ILGSHNSPLC HVDLNDILNF EEFTRQLTNE EQQQLLKHLP 360 PVDAIKFPYS LESMFDSPQF IENLTSFQQL LAEGVFDISF PGAKTEDCKT LKRLALSNSS 420 KSKWVERYHL LKKYKTSYGK SIVSAPNMAS SNFRHVKRLQ DNETQSLPDV KMMKSPKRII 480 MKGSYENKDL MDYDGGSCFS PKSLFALPPD GSSFLMDSMN FVDESSDQDL LLDVPSNGSF 540 AQAELLHPAM SFGAPQATSS SSIYPHVLHP

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MRNYRVMSDF VYLLIALEVP MIPKIPSQSK YLYLKNDSDV NECTPLWRNG PPDKPVLCNA  60
CGSRWRTKGT LVNYTPLHAR AEPDDYEDHR VSRVKSISVN KNKEIKLVKR KQNPESVVAG  120
GVNSDYSHGF RKLTEEDTSN RSSSGSAVSN SESCAQFGSG DASDLTGPAQ SMVWDSMVPS  180
RKRTCVGRPK PSPVEKLTKD LYTILHEQQS SYFSGSSEED LLFESETPMV SVEIGHGSVL  240
IRHPNSIARE EESEASSISV DNKQCHANEA YSHSATLFVH NNNKGVNMAS TVSGRMNNLS  300
GQGMQHEPMK REKSQLDNLQ ILGSHNSPLC HVDLNDILNF EEFTRQLTNE EQQQLLKHLP  360
PVDAIKFPYS LESMFDSPQF IENLTSFQQL LAEGVFDISF PGAKTEDCKT LKRLALSNSS  420
KSKWVERYHL LKKYKTSYGK SIVSAPNMAS SNFRHVKRLQ DNETQSLPDV KMMKSPKRII  480
MKGSYENKDL MDYDGGSCFS PKSLFALPPD GSSFLMDSMN FVDESSDQDL LLDVPSNGSF  540
AQAELLHPAM SFGAPQATSS SSIYPHVLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.2	1e-149	GATA family protein