PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001948.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 300aa    MW: 34739.1 Da    PI: 7.6561
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001948.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.4e-08106127526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f+ tG+C+ GdrC +aHg
  PCP001948.1 106 ICPAFRSTGYCRKGDRCECAHG 127
                  7********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MMQGVHPGYY YQLVDPSVYY SGLLRSPVQY QGQYHDPMIP VQYQCQSHDP MIDNAIFGSD  60
EFRMYAYKVK RCQRMGAHDW TNCPYAHRGE KAQRRDPRKF AYAAIICPAF RSTGYCRKGD  120
RCECAHGVFE YWLHPAKYRT RACASLENGY CPRKVCFFAH TPDELRPQHT YSGHKYYVAY  180
DQQAGFYPPY HYYKYQNNSD LYRAAPMTPK ANRGGGGVAT EAPWTAEEYQ TMMNNKKIVD  240
ESCLKVEEFL NSLRALKLSD YEMEYDQGEI DAACGMKSYG GGEASVSEMP QFDWINKLLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.12e-57C3H family protein