PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001929.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 438aa    MW: 47864.4 Da    PI: 7.4747
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001929.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.2e-09140160526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C +++r G C++Gd+C FaHg
  PCP001929.1 140 VCADYRR-GSCSRGDSCEFAHG 160
                  799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    
MSSVCAEQHK FHPSHQLLSC KKTLLRDTNI DIPPRKLLTC RSPQEFSSSD VYAAADYGSP  60
LFSSADEALL RKFLPYNTGS DGSDDDEVDP YSSDHFRMFE FKVRRCTRSR SHDWTDCPFA  120
HPGEKARRRD PRRHHYSGTV CADYRRGSCS RGDSCEFAHG VFECWLHPAR YRTEACKDGK  180
NCKRKVCFFA HTPRQLRILS ADQVLSPTAS SKKFHLNNHL PVGSPRSCSN NKQYCCLFCH  240
PAAATSSPTS TLLAGMSHPL SPPVSPAGNC SSVSGFHSSP VMSRCGGLGL GGLDQVHAST  300
GGLMTSKEVV AELMSSMEAM KFNEAAAAGA AASPKRWVDV SFDMYMNYAS SDDDLQPQQQ  360
FILSPSTPSP TSRPFGGGGR GINFFGGDEN CSPRNGSLLG FDRDTNTHIN KTEIVNGEGF  420
ASAGDSDPDL GWVNDLLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.15e-79C3H family protein