PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001883.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YB

Protein Properties

Length: 438aa MW: 48415.8 Da PI: 5.1414

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001883.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	163.1	3.9e-51	58	150	1	93
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 vreqdr++Pianv+rim+++lP +akis+daket+qecvse+i+f+t+ea+++cqre+rkt++++d+lwa+++lGf++yvepl++yl++yre PCP001883.1 58 VREQDRYMPIANVIRIMRRILPPHAKISDDAKETMQECVSEYIAFITGEANERCQREQRKTVTAEDVLWAMGKLGFDNYVEPLTIYLQRYRES 150 59*****************************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MEFQNQHETR QSGGPQRSSQ MIFRSSGESC DNPGHVMNPP LAGSSDNNTE QRAPQCLVRE 60 QDRYMPIANV IRIMRRILPP HAKISDDAKE TMQECVSEYI AFITGEANER CQREQRKTVT 120 AEDVLWAMGK LGFDNYVEPL TIYLQRYRES GSSDRSQFVK REERQLMDYY PPGHAGQVAM 180 MPPPPPSYGP GYYFGPQHGP PMYDASMMGM FRDCSSSDAG GGGRRRLLGR RLDGIKSATV 240 SPIEGQAAVN CIPELINVRK IKEAVEDAGF PVSEFPQQDV AVCRLRIKGM ACTSCSESVE 300 CALRMVDGVR NAVVGLSLEE AKVRFDPNLT DTSCIIQAIE DAGFGAELVS SGNDVNKLHL 360 KLEGVDSLED MTIVQSVVES VEGVSNVEVD LAMKKVTITY DSDLTGPRSL IRCIEEAGHE 420 SKVYQASLYI CSSKTKRS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MEFQNQHETR QSGGPQRSSQ MIFRSSGESC DNPGHVMNPP LAGSSDNNTE QRAPQCLVRE  60
QDRYMPIANV IRIMRRILPP HAKISDDAKE TMQECVSEYI AFITGEANER CQREQRKTVT  120
AEDVLWAMGK LGFDNYVEPL TIYLQRYRES GSSDRSQFVK REERQLMDYY PPGHAGQVAM  180
MPPPPPSYGP GYYFGPQHGP PMYDASMMGM FRDCSSSDAG GGGRRRLLGR RLDGIKSATV  240
SPIEGQAAVN CIPELINVRK IKEAVEDAGF PVSEFPQQDV AVCRLRIKGM ACTSCSESVE  300
CALRMVDGVR NAVVGLSLEE AKVRFDPNLT DTSCIIQAIE DAGFGAELVS SGNDVNKLHL  360
KLEGVDSLED MTIVQSVVES VEGVSNVEVD LAMKKVTITY DSDLTGPRSL IRCIEEAGHE  420
SKVYQASLYI CSSKTKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-58	NF-YB family protein