PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001857.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 659aa MW: 73667.5 Da PI: 6.9426

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001857.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.9	3.2e-29	61	146	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++keg+ + + + +t+++fdql+ PCP001857.1 61 RWPRQETLALLQIRSDMDVAFRDASVKGPLWEEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGSGKSEGKTYRFFDQLN 146 8*****************************************************************999888889*****97 PP
2	trihelix	101.3	7.4e-32	460	544	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++++++++++ k+plWee+s +mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ l+ PCP001857.1 460 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHLLD 544 8******************************************************************97.99*******987 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MLGDSTSVLG SSTSCDAAAV AVAAPEGRGG DGSNNNLGEE TFRGGHEELS GGGERSFGGN 60 RWPRQETLAL LQIRSDMDVA FRDASVKGPL WEEVSRKLAA LGYHRSAKKC KEKFENVYKY 120 HRRTKEGRTG SGKSEGKTYR FFDQLNAFEN QPPTPGSTST THHHQRKPHQ PMAAAAATVT 180 TTAMANPPTI FHPNSSTTTT STTVPSSATP HPTITTVSSQ GIATPTLNNL TLPSSFPPTN 240 PIVLPAPPQP LPHQPTTANP TTNANQHQQQ QHTGFPTSLS AIPTDIISNS TSSSTSSDEE 300 LEGRAKKKRK WKEFFERLMK DVIQKQEDLQ KRFLETIEKR EQERMVREEA WRMQEMTRIN 360 REREILAQER SITAAKDAAV MSFLQRVSEQ QQNQNQHQST PNQSQLLRLQ PAPLPPPPRK 420 PAPPPPQAQP QQTAMNIDIV PKSNNNGEND NLMMPPSSSR WPKVEVQALI KLRTSLDSKY 480 QENGPKGPLW EEISGAMRKL GYNRNAKRCK EKWENINKYF KKVKESNKRR PEDSKTCPYF 540 HLLDSLYRER NNVNSTSTNY SSSQFKPENS VPLMVRPEQQ WPPQPPSPQQ QDHQGLMMGI 600 DHHQNQGDDH HDQQDKENNI GDDDDEEEDG EEEEDYAEGD GNYEIVANKP APVGAATAE

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MLGDSTSVLG SSTSCDAAAV AVAAPEGRGG DGSNNNLGEE TFRGGHEELS GGGERSFGGN  60
RWPRQETLAL LQIRSDMDVA FRDASVKGPL WEEVSRKLAA LGYHRSAKKC KEKFENVYKY  120
HRRTKEGRTG SGKSEGKTYR FFDQLNAFEN QPPTPGSTST THHHQRKPHQ PMAAAAATVT  180
TTAMANPPTI FHPNSSTTTT STTVPSSATP HPTITTVSSQ GIATPTLNNL TLPSSFPPTN  240
PIVLPAPPQP LPHQPTTANP TTNANQHQQQ QHTGFPTSLS AIPTDIISNS TSSSTSSDEE  300
LEGRAKKKRK WKEFFERLMK DVIQKQEDLQ KRFLETIEKR EQERMVREEA WRMQEMTRIN  360
REREILAQER SITAAKDAAV MSFLQRVSEQ QQNQNQHQST PNQSQLLRLQ PAPLPPPPRK  420
PAPPPPQAQP QQTAMNIDIV PKSNNNGEND NLMMPPSSSR WPKVEVQALI KLRTSLDSKY  480
QENGPKGPLW EEISGAMRKL GYNRNAKRCK EKWENINKYF KKVKESNKRR PEDSKTCPYF  540
HLLDSLYRER NNVNSTSTNY SSSQFKPENS VPLMVRPEQQ WPPQPPSPQQ QDHQGLMMGI  600
DHHQNQGDDH HDQQDKENNI GDDDDEEEDG EEEEDYAEGD GNYEIVANKP APVGAATAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-85	Trihelix family protein