PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP001808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26537.2 Da PI: 8.4585 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.8 | 2.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s PCP001808.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTSGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 96.1 | 5.4e-32 | 80 | 173 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s+++++++s +qe+ +Lk ++e Lqr+qRh+lGedL L +keLqqLe+qL+ slkkiRs+K+++++ qi+elq ke++l e+n+ Lr+klee PCP001808.1 80 ASQSAEDEQSRYQEYLNLKTKVEALQRTQRHILGEDLVHLGMKELQQLENQLDMSLKKIRSTKTQFMHVQISELQGKEEMLLEANTGLRRKLEE 173 45778899***********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST SGKLYEFCSG 60 PSIAKTLERY QRCTYGELGA SQSAEDEQSR YQEYLNLKTK VEALQRTQRH ILGEDLVHLG 120 MKELQQLENQ LDMSLKKIRS TKTQFMHVQI SELQGKEEML LEANTGLRRK LEEITAGLQR 180 SWNSNHQAAQ LEGFPEHLQS TNALQIGTPV VTNDEANVAT SSAQSGTGFF PGWML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.1 | 2e-88 | MIKC_MADS family protein |