PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001808.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26537.2 Da    PI: 8.4585
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001808.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.2e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  PCP001808.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTSGKLYEFCS 59
                 79***********************************************96 PP

2K-box96.15.4e-32801737100
        K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   s+++++++s +qe+ +Lk ++e Lqr+qRh+lGedL  L +keLqqLe+qL+ slkkiRs+K+++++ qi+elq ke++l e+n+ Lr+klee
  PCP001808.1  80 ASQSAEDEQSRYQEYLNLKTKVEALQRTQRHILGEDLVHLGMKELQQLENQLDMSLKKIRSTKTQFMHVQISELQGKEEMLLEANTGLRRKLEE 173
                  45778899***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST SGKLYEFCSG  60
PSIAKTLERY QRCTYGELGA SQSAEDEQSR YQEYLNLKTK VEALQRTQRH ILGEDLVHLG  120
MKELQQLENQ LDMSLKKIRS TKTQFMHVQI SELQGKEEML LEANTGLRRK LEEITAGLQR  180
SWNSNHQAAQ LEGFPEHLQS TNALQIGTPV VTNDEANVAT SSAQSGTGFF PGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.12e-88MIKC_MADS family protein