PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001712.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 319aa    MW: 34695.7 Da    PI: 9.7323
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001712.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.11.7e-29152207258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh+hA+rRpRg+gGrF
  PCP001712.1 152 GPIYVNAKQYHGIIRRRQSRAKAVIENRA-ARLRKPYMHESRHRHAMRRPRGCGGRF 207
                  69***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MAMQTVYFKE HEGIAPNPIG QFSSALSGPW WNAFGSQPVY GESCGQSKPF NREQPNTGDH  60
FTATKLAGQG TEQELEKGHT NLFTIFPGDG QKSQAAIGPP GKYRGHFELG FSQPMICAKY  120
PYMDQCYGLF SAYGPQISGR IMLPLNLTTD EGPIYVNAKQ YHGIIRRRQS RAKAVIENRA  180
ARLRKPYMHE SRHRHAMRRP RGCGGRFLNT KTMNNGNKGT EGKQGGDGQL FRLSGSQSPE  240
VLQSDSGTLN SSRETNGSSS NISGSEVSMH VVWSFRPNGL QQEITAATSK FDSKGKDGVG  300
ANSAASSPST PQPDGEALV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192201RHRHAMRRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.28e-57NF-YA family protein