PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001682.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

E2F/DP

Protein Properties

Length: 636aa MW: 69102.6 Da PI: 6.5789

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001682.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	85.3	4.6e-27	144	209	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg PCP001682.1 144 RYDSSLGLLTKKFINLIKRAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 209 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MSGFARAPNR QAPPATAATG GGGSQILPPL RRHLAFESTK PQPFPSDNYH RFAGGPRRAG 60 DQEPEAILVR SPQLTRKDNN EVGYSDWTNS PGNTNVIQSP LQTPVSAKGG RVNNRSKASK 120 GGRSGPQTPV SIVGSPSTPA GSCRYDSSLG LLTKKFINLI KRAEDGILDL NKAAETLEVQ 180 KRRIYDITNV LEGIGLIEKK LKNRIRWKGF DASMPGELDG DLSILQAEVE NLSSQERRLD 240 DRIRWLFVTE DDIKGLPCFH NETLIAIKAP HGTTLEVPDP DEAVDYPQRR YRIILRSTMG 300 PIDVYLVSQF EEKFEDVHGA EPPVNFPIAS GSGSNEHPTT EVVTVESSGK EIEPWLQQAH 360 HACSDMNASQ EFAGGMMKIV PSDVDNDADY WLLSDAEVSI TDMWRTDSGV GWNGTDILHA 420 DFGVTDVSTS RPQTPPSRVV EVPSHAVNFA QSCSTMDDST LLSSQPAGPL LPSSKLGRRN 480 SISTSVVVPA KLSLLSDTTT PTSATKHLQR LHSSTFPNGD VSPPAPPQLD LEFLSLKTTE 540 SYTSLKDLLP SSAVNSPTAA SANNSGYEIS IRNRLVKQAA WAYLQPMSST SDPSGPNFLR 600 RLCQKLSPCL SFFTNRVVPF LSRALGHTLL CIGLAT

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MSGFARAPNR QAPPATAATG GGGSQILPPL RRHLAFESTK PQPFPSDNYH RFAGGPRRAG  60
DQEPEAILVR SPQLTRKDNN EVGYSDWTNS PGNTNVIQSP LQTPVSAKGG RVNNRSKASK  120
GGRSGPQTPV SIVGSPSTPA GSCRYDSSLG LLTKKFINLI KRAEDGILDL NKAAETLEVQ  180
KRRIYDITNV LEGIGLIEKK LKNRIRWKGF DASMPGELDG DLSILQAEVE NLSSQERRLD  240
DRIRWLFVTE DDIKGLPCFH NETLIAIKAP HGTTLEVPDP DEAVDYPQRR YRIILRSTMG  300
PIDVYLVSQF EEKFEDVHGA EPPVNFPIAS GSGSNEHPTT EVVTVESSGK EIEPWLQQAH  360
HACSDMNASQ EFAGGMMKIV PSDVDNDADY WLLSDAEVSI TDMWRTDSGV GWNGTDILHA  420
DFGVTDVSTS RPQTPPSRVV EVPSHAVNFA QSCSTMDDST LLSSQPAGPL LPSSKLGRRN  480
SISTSVVVPA KLSLLSDTTT PTSATKHLQR LHSSTFPNGD VSPPAPPQLD LEFLSLKTTE  540
SYTSLKDLLP SSAVNSPTAA SANNSGYEIS IRNRLVKQAA WAYLQPMSST SDPSGPNFLR  600
RLCQKLSPCL SFFTNRVVPF LSRALGHTLL CIGLAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-158	E2F/DP family protein