PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP001420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | NF-YB | ||||||||
Protein Properties | Length: 245aa MW: 26919.8 Da PI: 6.0308 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 166.6 | 3.2e-52 | 56 | 150 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdr++Pianv+rim+++lP +akis+daket+qecvse+i+f+t+ea+++cqre+rkt++++d+lwa+++lGf++yvepl++yl++yre e+ PCP001420.1 56 VREQDRYMPIANVIRIMRRILPPHAKISDDAKETMQECVSEYIAFITGEANERCQREQRKTVTAEDVLWAMGKLGFDNYVEPLTIYLQRYRESES 150 69******************************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MERMGGGLPS RHAKSWNPAN ANSSDGGNAI ANTSNPANSA GNSDNNTEQR APQCLVREQD 60 RYMPIANVIR IMRRILPPHA KISDDAKETM QECVSEYIAF ITGEANERCQ REQRKTVTAE 120 DVLWAMGKLG FDNYVEPLTI YLQRYRESES SDRSQFVKRE ERQPTDYCPP GHAVPQVAMM 180 SPPPPSYGPG YYFGPQHGPP MYDPSMMGMF RDGSSSGAGG GGSSSASGAQ GENSLGRFDP 240 FDHFK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 6e-60 | NF-YB family protein |