PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NF-YB
Protein Properties Length: 245aa    MW: 26919.8 Da    PI: 6.0308
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001420.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.63.2e-5256150195
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                  vreqdr++Pianv+rim+++lP +akis+daket+qecvse+i+f+t+ea+++cqre+rkt++++d+lwa+++lGf++yvepl++yl++yre e+
  PCP001420.1  56 VREQDRYMPIANVIRIMRRILPPHAKISDDAKETMQECVSEYIAFITGEANERCQREQRKTVTAEDVLWAMGKLGFDNYVEPLTIYLQRYRESES 150
                  69******************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MERMGGGLPS RHAKSWNPAN ANSSDGGNAI ANTSNPANSA GNSDNNTEQR APQCLVREQD  60
RYMPIANVIR IMRRILPPHA KISDDAKETM QECVSEYIAF ITGEANERCQ REQRKTVTAE  120
DVLWAMGKLG FDNYVEPLTI YLQRYRESES SDRSQFVKRE ERQPTDYCPP GHAVPQVAMM  180
SPPPPSYGPG YYFGPQHGPP MYDPSMMGMF RDGSSSGAGG GGSSSASGAQ GENSLGRFDP  240
FDHFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.26e-60NF-YB family protein