PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001188.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 701aa MW: 77002.1 Da PI: 6.843

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001188.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74	1.7e-23	117	218	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++k+iyr++++r++lt+GW+ Fv+ ++L +gD++vF + +++ PCP001188.1 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFKHIYRGTPRRHLLTTGWSTFVNHKKLVSGDSIVFL--RAENGD 210 89**************************996555555..89*******************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ PCP001188.1 211 LCVGIRRA 218 9**997 PP
2	Auxin_resp	110.8	1.4e-36	286	369	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk++ v++al++++++G Rfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+ PCP001188.1 286 AATLAANGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGLRFKMAFETEDSSRISWfMGTISSVQVAEPLRWPESPWRLLQ 369 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MDSKEKLKEA DRCLDPQLWH ACAGGMVQMP LVNAKVFYFP QGHAEHACGP VDFRNCPRVP 60 PYILCQVAAI KFMADPETDE VYAKIRLVPL NGGEAGYEDD GIGGLNGSET PDKPASFAKT 120 LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFK HIYRGTPRRH 180 LLTTGWSTFV NHKKLVSGDS IVFLRAENGD LCVGIRRAKR GSGSGPESSS GWNPMGGNCT 240 VPYGGFSAFL REDENKLMRN GNGNSSNSNG SLVGKGKVGP ESVSEAATLA ANGQPFEVVY 300 YPRASTPEFC VKASLVKAAL QIRWCPGLRF KMAFETEDSS RISWFMGTIS SVQVAEPLRW 360 PESPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPAIHL TPFSLPRKKM RLPQYPDFPF 420 EGQLPMPTFS GNLLGPSSPF GCLPDKTPAG MQGARHAHYG LSSSDMHLNK LHTGLFPAGF 480 PPLDHAAAPT KFTNNMVIHK PTISENVSCL LTMSHFTPTS KKPDDLKPPQ LILFGQPILT 540 EQQISLSSSG DTVSPVLTGN SSSDGNADRM VNHSDNSGSA LHRQSVQERS SCEGFQWYKD 600 TRNETELSLE TGHCKVFMES EDVGRTLDLS LLGSYDELYR KLADMFGIDN SETLNHVLYR 660 DGTGAVKHIG DEPFRYGQFP LNRVMAPKDG GPCPFNYQMS G

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MDSKEKLKEA DRCLDPQLWH ACAGGMVQMP LVNAKVFYFP QGHAEHACGP VDFRNCPRVP  60
PYILCQVAAI KFMADPETDE VYAKIRLVPL NGGEAGYEDD GIGGLNGSET PDKPASFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFK HIYRGTPRRH  180
LLTTGWSTFV NHKKLVSGDS IVFLRAENGD LCVGIRRAKR GSGSGPESSS GWNPMGGNCT  240
VPYGGFSAFL REDENKLMRN GNGNSSNSNG SLVGKGKVGP ESVSEAATLA ANGQPFEVVY  300
YPRASTPEFC VKASLVKAAL QIRWCPGLRF KMAFETEDSS RISWFMGTIS SVQVAEPLRW  360
PESPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPAIHL TPFSLPRKKM RLPQYPDFPF  420
EGQLPMPTFS GNLLGPSSPF GCLPDKTPAG MQGARHAHYG LSSSDMHLNK LHTGLFPAGF  480
PPLDHAAAPT KFTNNMVIHK PTISENVSCL LTMSHFTPTS KKPDDLKPPQ LILFGQPILT  540
EQQISLSSSG DTVSPVLTGN SSSDGNADRM VNHSDNSGSA LHRQSVQERS SCEGFQWYKD  600
TRNETELSLE TGHCKVFMES EDVGRTLDLS LLGSYDELYR KLADMFGIDN SETLNHVLYR  660
DGTGAVKHIG DEPFRYGQFP LNRVMAPKDG GPCPFNYQMS G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein