PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001082.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 412aa    MW: 45049.8 Da    PI: 8.2495
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001082.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.91.1e-4196172278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC++dls++++yhrrhkvCe hsk+p+v+++g +qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  PCP001082.1  96 CLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTINGNKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQP 172
                  **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MDWNLKAASW DLSELEQETF SNLDTTVDGS SSFGDHRTFK GSSFSVDLKL GQLGGSGNND  60
LVDMLKEPVP RTTSSFSSGP SKRSRVAYSG SQMVSCLVDG CNSDLSTCRD YHRRHKVCEL  120
HSKTPQVTIN GNKQRFCQQC SRFHALEEFD EGKRSCRKRL DGHNRRRRKP QPEPLSHPGS  180
FMSSYQGTPR LLPLSSSLVY PSTNIVNPTW AGIVKTEPDS GIHNHQLPMI DKQNMFLGSS  240
DSTSSSGYKG GKQFSLFQSS DSSPVHHNHQ TSHHHSASVC RPLLNTISFS ETAGGGGSGT  300
TKSKTFCDRL TTQTHDSDCA LSLLSSPQTQ QRSEIGLRHM VQQPNSISLM QQRFGPAGLH  360
GNSSSIEPMD SVLVSKGSGD ANVHCPGMFH IGSDGSQGSG NQHPQTPPFH WQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153170KRSCRKRLDGHNRRRRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.15e-65SBP family protein