PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001042.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 320aa    MW: 35530.5 Da    PI: 9.0677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001042.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.3e-07222526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 +C +f++ GtC++Gd C +aHg
  PCP001042.1  2 PCLDFRK-GTCRRGDLCEYAHG 22
                 6999***.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MPCLDFRKGT CRRGDLCEYA HGVFESWLHP AQYKTRLCKD GISCLRQVCF FAHKLEEMRP  60
LYVSTGSAMP SPHSATSAAV FMDMAATLNV LPGSTKAVPA MSPPFTPPIS LRNGIFDYSM  120
AWPQQHIPSL YLPGSNIQAS RLSSSFNAND VPTEEVNMLH NFEMQQQQSF HDGFSFSHSY  180
ISASSMSHLH HRETLTPSNL NDVFTSHLSS PRFADQLANS SAFSPSKISV VRNQLHQQQS  240
MLSPIRTNVF SPRMVDQNLL QVPFGFSSLR MMSPRSMKPL SPIGTRVSTL AQHEKQKPLY  300
SPNSCDVGSN GVGSPVRMSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.18e-90C3H family protein