PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000850.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 454aa MW: 49405.9 Da PI: 8.3789

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000850.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.8	3e-09	139	175	1	43
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAa 43 s+y+GV++++++grW+++I+d + k+ s g f+ta Aa PCP000850.1 139 SQYRGVTFYRRTGRWESHIWD------CgKQLSGG-FDTAHSAA 175 78*******************......44888844.88766555 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MEVEDSGTSN SSVVNADEAP TPGNAGDEDS TNNTTSSFMF DILRREKDGL FISGDGDQTQ 60 SLQFVTRPLF PVAGYGGGGK EGADCGLGLS SSSLSTARTH WLNLSFAESG SQTQAELRVV 120 QQKKQPPRKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQLSGGFDT AHSAASSLGF 180 NDFRAYDRAA IKFRGIDADI NFNVGDYEED MKLLGHLNKE EFVHVLRRQT TGASRGNTKY 240 RGVAAARLPE CGAKWEDRMG QVPRKKVFEK EAIKCRTGRE AVTNFDPNIY EGETVLNASV 300 EGSGHNLDLS LGISQPCSTG QKRIGKLGDF QFPKERLMVN GFSSAAMGQL PHVLTKCPAL 360 YPGFVQRHGE ITSDHNRLQP ISSPRYTNGA CQVYGNSNNV NPMQVFSIAA SSGFPSSTAT 420 TPPPPTSLPP NLQDSNTSAY NLGCLPFPAT SNIY

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MEVEDSGTSN SSVVNADEAP TPGNAGDEDS TNNTTSSFMF DILRREKDGL FISGDGDQTQ  60
SLQFVTRPLF PVAGYGGGGK EGADCGLGLS SSSLSTARTH WLNLSFAESG SQTQAELRVV  120
QQKKQPPRKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQLSGGFDT AHSAASSLGF  180
NDFRAYDRAA IKFRGIDADI NFNVGDYEED MKLLGHLNKE EFVHVLRRQT TGASRGNTKY  240
RGVAAARLPE CGAKWEDRMG QVPRKKVFEK EAIKCRTGRE AVTNFDPNIY EGETVLNASV  300
EGSGHNLDLS LGISQPCSTG QKRIGKLGDF QFPKERLMVN GFSSAAMGQL PHVLTKCPAL  360
YPGFVQRHGE ITSDHNRLQP ISSPRYTNGA CQVYGNSNNV NPMQVFSIAA SSGFPSSTAT  420
TPPPPTSLPP NLQDSNTSAY NLGCLPFPAT SNIY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	1e-64	AP2 family protein