PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000834.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 952aa    MW: 104890 Da    PI: 7.023
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000834.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.5e-192179357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PCP000834.1 21 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79
                 5679*****************************************************97 PP
2START180.11.3e-561503582205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v s+g  g+++l +++
  PCP000834.1 150 IAEETLAEFLSKATGTAVEWVQLPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWFRNCRSVDVLNVMSTGngGTIELLYMQ 246
                  7899******************************************************.8888888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s +  
  PCP000834.1 247 LYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSILHIVDHMDLEPWSVPEVLRPLYESPTLL 344
                  ****************************************9988899*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++a+l+++++
  PCP000834.1 345 AQKTTMAALRNLRQ 358
                  **********9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    
MMAVTSSCKD GGMKMQMDNG KYVRYTPEQV EALERLYHEC PKPSSMRRQQ LIRECPILSN  60
IEPKQIKVWF QNRRCREKQR KEASRLQTVN RKLTAMNKLL MEENDRLQKQ ATLATTDTSC  120
ESVVTSGQHH LTAQQHPPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV QLPGMKPGPD  180
SIGIVAISHG CTGVAARACG LVGLDPTRVA EILKDRPSWF RNCRSVDVLN VMSTGNGGTI  240
ELLYMQLYAP TTLAPARDFW LLRYTSVLED GSLVVCERSL NNTQNGPSMP PVQNFVRAEM  300
LPSGYLIRPC EGGGSILHIV DHMDLEPWSV PEVLRPLYES PTLLAQKTTM AALRNLRQIS  360
QEVSKPNSAG WGRRPAALRA LSQRLSKGFN EAVNGFTDEG WSVLESDGVD DVTLLVNSSP  420
GKMMSANLYT DGVPSMSTAV LCAKASMLLQ NVPPAILLRF LREHRSEWAD RSIDAYSAAA  480
VKAGPCNMLG PRVGSFGDQV ILPLAHTIEH EEFMEVIKIE NMGHYREDMI MPAADIFLLQ  540
LCSGVDENAV GTCSELVFAP IDASFSDDAP ILPSGFRIIP LDSRMDTPSP NRTLDLASAL  600
EVGPAGSRAS GDNAGHSGNT KSVMTIAFQF AFEIHLQENV ASMARQYVRS IIASVQRVAL  660
ALSPSRFGSH AGFRPPPGTP EAQTLAGWIC QSYRCYLGGE LLKTEGSESI LKSLWHYPDA  720
ILCCSLKAMP IFTFGNQAGL DMLETTLIAL QDIMLEKIFD DNGRKTLCSE FPQIMQQCPN  780
LTGGSFKGDN LLSILRTVGA LFLFVVGTVR VFLKSTSLRC ISNLRLVDLR NTFTVPTTKR  840
NKPSSGGISE NSRSSESHVM KSGSQPSIWF VWVRIMEALS LFLLLLEEVE YFCCPWTKPS  900
YWDKSLEKRR PVIFENSSGG SGRSLSQVVK STSQAALWSA WFGFEDAIFL LY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein