PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000742.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 342aa    MW: 38937.3 Da    PI: 5.4187
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000742.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.71.2e-2139130183
     trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                  rWt++e+ +Lie++r +e++++rg+           +p+W+ vs+++r+rg++r p+qC+++w+nl  ++kki+++e + + e++s +++ +
  PCP000742.1  39 RWTRHETFVLIEGKRVVENAVQRGQrstsalgaeNFEPKWDLVSSYCRQRGMSRLPVQCRKRWSNLLVDFKKIRNWEAQIEREAESFWVMRN 130
                  8*********************98666677776588*******************************************9888888887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MALESMNHEA ASPRPDQADK QQTPNGSSED KTKITRHPRW TRHETFVLIE GKRVVENAVQ  60
RGQRSTSALG AENFEPKWDL VSSYCRQRGM SRLPVQCRKR WSNLLVDFKK IRNWEAQIER  120
EAESFWVMRN DARRERRLPG FFDREVYNVL DGKEVTATEA CPLALFMPGQ TDAMDGDGTE  180
EAAAEEEEEE EGPEKDLRGG RDDMAEDGLC SDFEESGQDK TIKKSKNENI MQGSPTKTVT  240
TPMPNSGVVK EKRSLGSKTS GENIYQEKWK QRRVSTDESE HSNNIDQLVK VLERNSNMLS  300
AQLEAHNINC HLEREQRKEQ NNSILAALGK VTDVLARIAD KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-76Trihelix family protein