PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000737.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 849aa    MW: 94510.9 Da    PI: 6.8451
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000737.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23159260199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++ +++a+e+      +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el
  PCP000737.1 159 FCKTLTASDTSTHGGFSVLRRHADEClpqldmS-RQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGEL 253
                  99****************************963.3334459************************************************..449999* PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +v+v+r+
  PCP000737.1 254 RVGVRRA 260
                  ****996 PP
2Auxin_resp1141.3e-37285367183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+ t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e++++Gt++g++d+d+ rW++SkWr+Lk
  PCP000737.1 285 AWHAILTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQKFTGTIIGTEDADTKRWRDSKWRCLK 367
                  79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    
MTSSEVSIKD NCGNPRGESF SSGFSDHNDP RTVGEGQNGH STVSAGRDAE TALYTELWHA  60
CAGPLVTVPR ERERVFYFPQ GHIEQVEAST NQVADQQMPV YNLPSKILCR VINVSLKAEP  120
DTDEVFAQVT LLPEPNQDEN AVEKEPPPPL PPRFQVHSFC KTLTASDTST HGGFSVLRRH  180
ADECLPQLDM SRQPPTQELV AKDLHGSEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG  240
DAFIFLRGEN GELRVGVRRA MRQQGSVPSS VISSHSMHLG VLATAWHAIL TGTMFTVYYK  300
PRTSPAEFIV PFDQYMESVK NNYSIGMRFK MRFEGEEAPE QKFTGTIIGT EDADTKRWRD  360
SKWRCLKVRW DETSTIPRPE RVSPWKIEPA LAPPALNPLP MPRPKRPRTH MVPSSPDSSV  420
HTREVGSSKV NVDPAMPGGF SRVLQGQEFP TLRGNFAESE SDTTEKSVAW PPSKDEEKID  480
VVSASRRYGS ENWMSSGRHE PTYTDLLSGF GNNVDSSHGI CPPFVDQGVA SANSMRKHSL  540
DQEGKYNSRS WSMLPSSLSL SLDSNQKGPL GNMSHQAQGN SRYGGFGDYS VVNGHRIELP  600
HGNWMMPPPP PSPFENLGNA RDNMPRPQML LDKHEAVKPK DGNCKLFGIP LITPDPALSH  660
RNMMNESPRN NQAQTFESDL NSEKSRGSKS TDNLVAVSEP ALQTSQQHIR DVQGKSQGGS  720
TRSCTKVHKQ GIALGRSVDL TKFNNYKELI AELDMLFEFG GELMSPKKNW MIVYTDDEGD  780
MMLVGDDPWQ EFCGIVRKIF IYTREEVQKM NPGTLNAHGE DNLSSGAEGV DAREGKSQPL  840
PSASTAEKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein