PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000613.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 567aa MW: 63727.7 Da PI: 6.2072

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000613.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	77	101	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f G C+ G++C++aHg PCP000613.1 77 YKTRLCVNFKS-GMCRNGENCNYAHG 101 9******99.***********8 PP
2	zf-CCCH	27.5	5.2e-09	139	161	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H PCP000613.1 139 MKLCKKFYNGEECPYGDRCNFLH 161 689****66********** PP
3	zf-CCCH	41.4	2.4e-13	220	245	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ + tG C++G++C+FaHg PCP000613.1 220 WKTKLCNKWETTGKCPFGEKCHFAHG 245 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MPPQTPYNGG GSNAVNCWPP AFSENNDDQH SQFEQQPFKR ARNSEESQSN PMPYPPMNIR 60 VQQPNAPVNK GASNIFYKTR LCVNFKSGMC RNGENCNYAH GIEDIRHPPP NWQELVSVRE 120 EDRPLPGNWD DDQKIIHRMK LCKKFYNGEE CPYGDRCNFL HEDPAKFRDD SGRFRENTAI 180 SIGTTGPPVP HGSGSNHPEE NRLVNAGMDA LRGNVKPVYW KTKLCNKWET TGKCPFGEKC 240 HFAHGLTDFL ANCGVQLSGE SLVYLGSRPE DDLVYWAIDV SADSESSLVA ELGSKQLCFV 300 ELRTLMVATD WADARAMREL AIAGHARALL EWHSISQFCG HCGEKTVPKE AGRRKQCSNE 360 LCRKRVYPRV DPVVIMLVID RENDRALLSR QSRFVPRMWS CLAGFIEPGE SLEEAVRRET 420 WEETGIEVGE VVYHSSQPWP VGPNSMPCQL MVGFFAYAKS LEINVDKEEL EDAQWHSRED 480 VKRALAFAEY KKAQTTAASK VEQMCKGVEK GQNFSADFNV ESGELAPMFI PGPFAIAHHL 540 ISSWVYQDAT DGVTARLKQT SGSTSNL

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MPPQTPYNGG GSNAVNCWPP AFSENNDDQH SQFEQQPFKR ARNSEESQSN PMPYPPMNIR  60
VQQPNAPVNK GASNIFYKTR LCVNFKSGMC RNGENCNYAH GIEDIRHPPP NWQELVSVRE  120
EDRPLPGNWD DDQKIIHRMK LCKKFYNGEE CPYGDRCNFL HEDPAKFRDD SGRFRENTAI  180
SIGTTGPPVP HGSGSNHPEE NRLVNAGMDA LRGNVKPVYW KTKLCNKWET TGKCPFGEKC  240
HFAHGLTDFL ANCGVQLSGE SLVYLGSRPE DDLVYWAIDV SADSESSLVA ELGSKQLCFV  300
ELRTLMVATD WADARAMREL AIAGHARALL EWHSISQFCG HCGEKTVPKE AGRRKQCSNE  360
LCRKRVYPRV DPVVIMLVID RENDRALLSR QSRFVPRMWS CLAGFIEPGE SLEEAVRRET  420
WEETGIEVGE VVYHSSQPWP VGPNSMPCQL MVGFFAYAKS LEINVDKEEL EDAQWHSRED  480
VKRALAFAEY KKAQTTAASK VEQMCKGVEK GQNFSADFNV ESGELAPMFI PGPFAIAHHL  540
ISSWVYQDAT DGVTARLKQT SGSTSNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	2e-72	C3H family protein