PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000404.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 476aa MW: 52635 Da PI: 7.6962

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000404.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.5e-13	279	327	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r ++ ++Er+RR +i+++++ Lr+l+Pk +K++ a+i A+eYI +Lq PCP000404.1 279 RSKNLIAERNRRTKIKDGLFALRSLVPKI-----TKMNTAAIIGDAIEYIEELQ 327 6778899*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MRLIGLEGAM ERLRPLVEAK QWDYCVVWKL GDDPSRFIEL MGCCCGGGYD GGTVKVEEGE 60 SDETRVCRDG FLKHSIRTKA CEALAQLPCS MPLYSGIHTE VVISMQPRWL CGHPNASASN 120 PSQSHDSTGT RVLIPMLSGL IELFSTKNIP ENRKMVELFM ASFNVSVKQE VISAHDYASV 180 SLNASEPQRV LPSLSFASVI PRPHVFPSVS PSTSCPEGSS SGSNPSSHQH PLLSSHSKKP 240 KCGDNLFQQP AGFASGSGSV SVEEEHNAKV NRKQSGHYRS KNLIAERNRR TKIKDGLFAL 300 RSLVPKITKM NTAAIIGDAI EYIEELQKKE KELQDELREL DEEEDLTKTK ADMKVLALDE 360 RKEGRICLTS AEQNKSSSSF VRKSPTVVQV EVNQIGKRDC LIKLFSEHNR GGFARLMENM 420 DSLGLQVVDA NVTTFDGNVL NILKVEANKD IQAKKLRDSL IQLTRETNQT VHKGII

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MRLIGLEGAM ERLRPLVEAK QWDYCVVWKL GDDPSRFIEL MGCCCGGGYD GGTVKVEEGE  60
SDETRVCRDG FLKHSIRTKA CEALAQLPCS MPLYSGIHTE VVISMQPRWL CGHPNASASN  120
PSQSHDSTGT RVLIPMLSGL IELFSTKNIP ENRKMVELFM ASFNVSVKQE VISAHDYASV  180
SLNASEPQRV LPSLSFASVI PRPHVFPSVS PSTSCPEGSS SGSNPSSHQH PLLSSHSKKP  240
KCGDNLFQQP AGFASGSGSV SVEEEHNAKV NRKQSGHYRS KNLIAERNRR TKIKDGLFAL  300
RSLVPKITKM NTAAIIGDAI EYIEELQKKE KELQDELREL DEEEDLTKTK ADMKVLALDE  360
RKEGRICLTS AEQNKSSSSF VRKSPTVVQV EVNQIGKRDC LIKLFSEHNR GGFARLMENM  420
DSLGLQVVDA NVTTFDGNVL NILKVEANKD IQAKKLRDSL IQLTRETNQT VHKGII

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	5e-59	bHLH family protein