PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP000204.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 421aa MW: 45709.6 Da PI: 8.3689 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.7 | 2.9e-11 | 52 | 77 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p PCP000204.1 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77 5799********************97 PP | |||||||
2 | zf-CCCH | 30.7 | 5.3e-10 | 82 | 101 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ PCP000204.1 82 YYLKTGTCKFGATCKFHHPR 101 8*****************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.3e-12 | 123 | 147 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ PCP000204.1 123 EVECAYYLRTGQCKFGSTCKFHHPQ 147 689********************97 PP | |||||||
4 | zf-CCCH | 38 | 2.8e-12 | 282 | 308 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ PCP000204.1 282 PGQPECQFYMKTGDCKFGAVCRFHHPR 308 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.8 | 3.6e-13 | 328 | 354 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ PCP000204.1 328 PGEPLCIFYSRYGICKFGPSCKFNHPM 354 589**********************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 421 aa Download sequence |
MDFDAGIPMS RAAAPVTDAR SLSPSLTQDA MWQMNLRSSE TMEAGPYPER TGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LYYLKTGTCK FGATCKFHHP RDKAGMAGRV ALNILGYPLR 120 PNEVECAYYL RTGQCKFGST CKFHHPQPTN MMVSVGASPV YPTVQSPTTP GQQSYAGGIT 180 NWSRASFIPS PRWQAQSSYA PLIVPQGVVS VPGWNAYSGQ LGSVSSPESQ QQTAGNSQMY 240 GTSHQGEPEN SGSQGGFSPY SSGSIPVGFY ALQRENVFPE RPGQPECQFY MKTGDCKFGA 300 VCRFHHPRER LIPAPDCVLS PMGLPLRPGE PLCIFYSRYG ICKFGPSCKF NHPMGIFTLN 360 LSASSSADAP ARRLLGSTSG AASLNLSSEG LVEAGSAKPR RLSLSEPRQM PSAEDSIDTE 420 E |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-170 | C3H family protein |