PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000172.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 345aa MW: 38903.1 Da PI: 6.8915

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000172.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.2e-18	82	134	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe+ +++ e++ +LAk lgL+ rq+ +WFqNrRa++k PCP000172.1 82 KKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 134 4568889*********************************************9 PP
2	HD-ZIP_I/II	129.7	1.2e-41	80	170	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eqvk+LE+sFe+ +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lk+++dalk++n++L++++++L++el PCP000172.1 80 EKKKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKKKFDALKADNDALQAHNKKLHAEL 170 69**************************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MAFPPCHTFM FQNHEDPDLH LANSSCPPQH FHGGGMPFMM KRSLSFSGVE NNKCHHHDQE 60 AALHGGGEDD LSDDGSQMGE KKKRLNLEQV KTLEKSFEMG NKLEPERKMQ LAKALGLQPR 120 QIAIWFQNRR ARWKTKQLEK DYDILKKKFD ALKADNDALQ AHNKKLHAEL LALKSKDSSN 180 EGGFDFKKET DQGSWSNGSE NSSDHHHLNL EISRTPATTS SPPSDSPHEM NGKNLFPPSS 240 SSLSSDHHHH HHHHLNLEIS RTPATTSSPP SDSPHEMNGK NIFPPSSSSL RSASTTQLLQ 300 GSSRSDLQCL KVDQMIQDEG LCSMFNGIDQ EHQGFWPWPE QHHFH

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MAFPPCHTFM FQNHEDPDLH LANSSCPPQH FHGGGMPFMM KRSLSFSGVE NNKCHHHDQE  60
AALHGGGEDD LSDDGSQMGE KKKRLNLEQV KTLEKSFEMG NKLEPERKMQ LAKALGLQPR  120
QIAIWFQNRR ARWKTKQLEK DYDILKKKFD ALKADNDALQ AHNKKLHAEL LALKSKDSSN  180
EGGFDFKKET DQGSWSNGSE NSSDHHHLNL EISRTPATTS SPPSDSPHEM NGKNLFPPSS  240
SSLSSDHHHH HHHHLNLEIS RTPATTSSPP SDSPHEMNGK NIFPPSSSSL RSASTTQLLQ  300
GSSRSDLQCL KVDQMIQDEG LCSMFNGIDQ EHQGFWPWPE QHHFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	6e-72	HD-ZIP family protein