PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000123.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 346aa MW: 39604 Da PI: 6.0136

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000123.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.5	5.4e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL++kveg ++el evi+ +d+yk++Pw+Lp k + ++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++ + PCP000123.1 6 LPPGFRFHPTDEELVGYYLHRKVEGLEFEL-EVIPVIDLYKFDPWELPeKsFLPRRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC-Q 101 79**************************.99**********95334455788**********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + + g +ktLvfy+grap g +tdW+mheyrl PCP000123.1 102 SGVNGYRKTLVFYRGRAPLGDRTDWIMHEYRL 133 889*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGGASLPPGF RFHPTDEELV GYYLHRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR 60 DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSGVNGYRKT LVFYRGRAPL 120 GDRTDWIMHE YRLNDDFAQG TSGHQGVFAL CRVVKKNEHA QKTHDSHGEP KAKRVGSASS 180 SGEDMTSTRI LKEPLSISAD TSSQASCLHN ESRYSSRATS PHEVNPMAEF EPDSRETNTA 240 DFWVSPDLIL DSSKDYPQLQ KAMPNYFQQY EFPSTMSPWQ SYEPRESPSS SYSNFTGDLK 300 MADDVNQMGG MSPFCGHTDY MGYYGNEEMQ FEGFDQTSSL RYPNPF

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGGASLPPGF RFHPTDEELV GYYLHRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSGVNGYRKT LVFYRGRAPL  120
GDRTDWIMHE YRLNDDFAQG TSGHQGVFAL CRVVKKNEHA QKTHDSHGEP KAKRVGSASS  180
SGEDMTSTRI LKEPLSISAD TSSQASCLHN ESRYSSRATS PHEVNPMAEF EPDSRETNTA  240
DFWVSPDLIL DSSKDYPQLQ KAMPNYFQQY EFPSTMSPWQ SYEPRESPSS SYSNFTGDLK  300
MADDVNQMGG MSPFCGHTDY MGYYGNEEMQ FEGFDQTSSL RYPNPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-107	NAC family protein