PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000061.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 426aa MW: 45986.3 Da PI: 8.6239

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000061.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	75.2	1.1e-23	80	128	1	49
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +CqvegC++dls+ak y++rhkvC hsk+p+v+v+gleqrfCqqCs PCP000061.1 80 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPTVIVAGLEQRFCQQCSSV 128 6*********************************************975 PP
2	SBP	46.3	1.1e-14	150	179	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 fh l efD++krsCrrrLa+hnerrrk+q+ PCP000061.1 150 FHLLPEFDQGKRSCRRRLAGHNERRRKPQP 179 9**************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MGSSSMTESG SSSSSSPPNS SAESLNGLKF GQTIYFEDVG FGAQHKSSSG SAAGSSSAGA 60 TPPKKQRGGG NMGQLGQPPR CQVEGCQVDL SDAKAYYSRH KVCGLHSKTP TVIVAGLEQR 120 FCQQCSSVLV ALDLDGAFWI YLFPYLDAWF HLLPEFDQGK RSCRRRLAGH NERRRKPQPG 180 SILSTRFGRL SSSLYDVCIF SSSNPTHKVL QNLLLEMIEN SNRVGSFLMD FTAYPRVSGR 240 DAWTTTRTSE RAPVVQNAND AGKFLQQPWH SNSGITTSGF YMQGSAGGTN YPGPGIPPGE 300 CITVVADSSC ALSLLSNQPW GSRNRVSGVG MNSLMNTQGI PVAQPTPHVA TSNHFPTTLW 360 GFKGNENGSS SHEMLPDLGL GQISQPLSSQ YSGVLELSQQ GRRQQHMELG HTRGYDSTSQ 420 QMNWSL

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MGSSSMTESG SSSSSSPPNS SAESLNGLKF GQTIYFEDVG FGAQHKSSSG SAAGSSSAGA  60
TPPKKQRGGG NMGQLGQPPR CQVEGCQVDL SDAKAYYSRH KVCGLHSKTP TVIVAGLEQR  120
FCQQCSSVLV ALDLDGAFWI YLFPYLDAWF HLLPEFDQGK RSCRRRLAGH NERRRKPQPG  180
SILSTRFGRL SSSLYDVCIF SSSNPTHKVL QNLLLEMIEN SNRVGSFLMD FTAYPRVSGR  240
DAWTTTRTSE RAPVVQNAND AGKFLQQPWH SNSGITTSGF YMQGSAGGTN YPGPGIPPGE  300
CITVVADSSC ALSLLSNQPW GSRNRVSGVG MNSLMNTQGI PVAQPTPHVA TSNHFPTTLW  360
GFKGNENGSS SHEMLPDLGL GQISQPLSSQ YSGVLELSQQ GRRQQHMELG HTRGYDSTSQ  420
QMNWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-57	SBP family protein