PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000052.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 296aa MW: 30976.8 Da PI: 9.3635

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000052.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	37	60	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H PCP000052.1 37 KSKPCTKFFSTAGCPFGESCHFLH 60 7789******************** PP
2	zf-CCCH	22.8	1.6e-07	101	126	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ + Ck+Gd+C+FaHg+ PCP000052.1 101 KSRICNKYNSAEGCKFGDKCHFAHGE 126 5689999999999***********96 PP
3	zf-CCCH	36.5	8e-12	263	287	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f + GtC +G+rC+FaHg PCP000052.1 263 YKTKLCDNFTK-GTCTFGERCHFAHG 287 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MDTRKRGRHE GGGLHSNGGF KKNKQELESF STGVGSKSKP CTKFFSTAGC PFGESCHFLH 60 YVPGGYNAVA QMMNLAPAPP PPRNIPGPPS HSNGSNSSGV KSRICNKYNS AEGCKFGDKC 120 HFAHGEWELG KPLAQSHDDP HAMGPGPGRM GNWMEPHPAR PASSFGASST AKISVDASLA 180 GAIIGKGGVH SKQICRQTGA KLSIRDHESN PNLRNIELEG TFEQIQQASA MVSELIATVS 240 ISGPGKAPGG GGPGAPAPPG SNYKTKLCDN FTKGTCTFGE RCHFAHGAAE LRKSGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	2e-90	C3H family protein