PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP000042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 200aa MW: 23146.9 Da PI: 8.2516 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.1 | 5.4e-17 | 62 | 116 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ + +k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PCP000042.1 62 RKKLRRSKDQSAFLEESFKEHSTLNPKQKLVLAKQLNLRPRQVEVWFQNRRARTK 116 56667799*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.6 | 1.7e-38 | 62 | 151 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+r sk+q+++LEesF+e+++L+p++K la++L+l+prqv+vWFqnrRARtk+ q+E+d+e+Lkr++++l+een+rL+ke +eL+ +l PCP000042.1 62 RKKLRRSKDQSAFLEESFKEHSTLNPKQKLVLAKQLNLRPRQVEVWFQNRRARTKLNQTEVDCEYLKRCCETLTEENRRLRKELQELK-TL 151 69*************************************************************************************9.55 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MPGVVASAEE ADDTAAPLSS PNSTVSSFQM DFGMRSGGRS SKRDLEVDAD RASDDEENGS 60 TRKKLRRSKD QSAFLEESFK EHSTLNPKQK LVLAKQLNLR PRQVEVWFQN RRARTKLNQT 120 EVDCEYLKRC CETLTEENRR LRKELQELKT LKTSQPFYVQ AAAACHHTHH VPLMWARGHN 180 CLSQHLHHHQ QQPHEELIWY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 9e-76 | HD-ZIP family protein |