PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000041.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 340aa MW: 37600.1 Da PI: 8.5965

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000041.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	8.7e-18	179	233	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PCP000041.1 179 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 233 678899***********************************************98 PP
2	HD-ZIP_I/II	127.2	7.1e-41	179	269	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk PCP000041.1 179 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 269 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MELALSLGDA SKPFLFLDKA PKIGSNKDLG FCMGLGSAAR SDESSRESTH EVYDQEEGRR 60 RSRVSSDPPL QLNLLPSAPV PRSHASSQLR FPWLTDNLAV SEPAGSSDGP GIGFDVNRMP 120 GVVASAEEAE DTAAPLSSPN STVSSFQMDF GIRSGGRSSK RDLEVDADRA SDDENGSTRK 180 KLRLSKDQSA FLEESFKEHS TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD 240 CEYLKRCCET LTEENRRLQK ELQELRALKT SQPFYMQLPA TTLTMCPSCE RVVTTASANT 300 STTTTTTTTN NHIKSVQKKQ PRLNPFAAQV HMQQHQGAAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	184	TRKKLRL
2	228	236	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-89	HD-ZIP family protein