PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0012310.1_g010.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 304aa    MW: 34262.4 Da    PI: 7.7906
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0012310.1_g010.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-172266147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               rgr++ eE+e++++++  lG++ W++Ia++++ gRt++++k++w+++
  Pav_sc0012310.1_g010.1.br 22 RGRFSFEEEEIIIQLHSVLGNK-WSAIASRLP-GRTDNEIKNYWNTH 66
                               89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
LKRCGKSCRL RWANYLRPDI KRGRFSFEEE EIIIQLHSVL GNKWSAIASR LPGRTDNEIK  60
NYWNTHIRKR LLRMGIDPVT HTPRLDLLEL SSAICSTLYS SSSPHNPQIN VPNLLGIGPI  120
MDPDLLNLAT TFLSCQQNQI GFSQINQTQF QSQLTQPNQI QNPVQEIQTC TTSNTLNVPF  180
LSYPSSSNLA GQGFVPTTNQ LGYYDSKYES MISYIPHQNY NQPCTSNNVN QYQNFQNMSS  240
FGSVLSSTPS SSPATTLNSS PAITYINSST EDERDSFCSN ILMHHDIPNG LNATKLLYER  300
NIMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-67MYB family protein