PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0010169.1_g050.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 289aa MW: 32822.1 Da PI: 5.4082 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.4 | 7.4e-11 | 51 | 80 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 ++r+eL+++l L+ qVk+WFqN+R+++k Pav_sc0010169.1_g050.1.br 51 DKQRKELSRELALEPLQVKFWFQNKRTQMK 80 689************************999 PP | |||||||
2 | START | 92.4 | 9.2e-30 | 130 | 288 | 2 | 164 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 + +a++el+++a+ +ep+W++s + n+de++++f++ ++ ea+r+s+vv+m++ +lv+ +d++ qW++ + Pav_sc0010169.1_g050.1.br 130 IVVAAMEELIRMAQMGEPLWMTSLdgntTVFNEDEYIRTFPRVAPkpnnhFKCEASRESAVVIMNHINLVA--MDVN-QWSTVF 210 56789*******************88777789********9977799999*****************9996..999*.****** PP S....EEEEEEEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS START 77 a....kaetlevissggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155 +a+tlev+ ++ splvp ++++vRy++q+ +g+w++v+ S+d ++++ ++++pSg+li+ Pav_sc0010169.1_g050.1.br 211 SgivsRAMTLEVLI---------SS-T--SPLVPtHESYYVRYCKQHADGTWAVVEDSLDTLRPNTA---PRSCQRRPSGCLIQ 279 *5555555555543.........32.3..489999******************************94...455789******** PP EECTCEEEE CS START 156 pksnghskv 164 +++ng+skv Pav_sc0010169.1_g050.1.br 280 EMPNGYSKV 288 ********9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence |
MFQPNLMEVG HLHPLDMAPN KSVSDIAQIR DDDFDSATKS DSDNPEGGSD DKQRKELSRE 60 LALEPLQVKF WFQNKRTQMK TQHELHENTQ LRNENEKLRA DNMRYREALG SASCPNCGGP 120 TTIREMIIEI VVAAMEELIR MAQMGEPLWM TSLDGNTTVF NEDEYIRTFP RVAPKPNNHF 180 KCEASRESAV VIMNHINLVA MDVNQWSTVF SGIVSRAMTL EVLISSTSPL VPTHESYYVR 240 YCKQHADGTW AVVEDSLDTL RPNTAPRSCQ RRPSGCLIQE MPNGYSKVM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 3e-90 | HD-ZIP family protein |