PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0008725.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 283aa    MW: 31775.1 Da    PI: 9.931
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0008725.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-121331246
                               HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Pav_sc0008725.1_g010.1.mk  1 LLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 33
                               789********.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
LLAAHRIHGN KWALIARLFP GRTDNAVKNH WHVIMARRQR EQSKVCGKRS YQDFCNDHSS  60
NTSSISNNFD VSRKFKSQGE LRSSASIGFD QNSSTKFFEF RNPNKDRTAM FMDSRHTSSS  120
PYNWNFATMS TTSNNAASSS VGLLGRERRD YFNNVSSNNN ISGCSKGSDH QFVHRRNNPT  180
TSSFMYGSYI GSTSAFGLPN YKRVNVPSPF GCLGLGDHIN LPEQHGRTFK KELANFCDNA  240
STLAKWRVAA TAKFGDHDCQ DHESIDHHKE TPFIDFLGVG ISS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73410.11e-21MYB family protein