PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0006080.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 1967aa MW: 220148 Da PI: 9.0724

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0006080.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	6e-08	855	891	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E e+++da +++G++ W+++a+ + +R+ +++ Pav_sc0006080.1_g010.1.mk 855 EWSKGELERFYDAYRKYGKD-WRKVAAAVR-NRSVEMVE 891 7***************99.*****.*98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1967 aa Download sequence
MKSKLLTFVV QHLSPPLIHG GFNTIVENSL SLSDSFPEMA QTPHSLLLLK RLSRCSPNLN 60 PPPAFLSLLK PFSTSPTPIS SLEPKPSSLS ARLSFVFDQI DAIEKERSEK DQTLQKIRAW 120 RESKKSQNNP ELGLGVVSDS ENNAKLISSD SVSSESERFE TPVAAKKEVE VVHPWPEWIE 180 LMERLVQQNY FDHRRNDEDR MIQDIGFNAS EAVLAAEEDA QGVDFKDFKT VQTACLNFGK 240 DRFDIMRSLS RQDIQVLVGF GCPSTDKKVV FSSKLLRKHT HLDEGDVCSS CSLRNSCERA 300 YLITNKEDEA RTIDIMRVLL AYGFDPVNGS VVNKSLLKQK SVKTVVRKLL HQVVKLSSVP 360 IDPNLPPPVI KKPPPKVKQP PPPPRRRVGR DDIEMKKGDW LCSKCDFMNF AKNTICLQCD 420 AKRPKRQLLP GEWECPGRNM ACFHCDCKRP PDEYLENKVQ EMQRGPRTRM EKTAVLHGDS 480 NAWNFDFDDN ESDGADVAAF EYADSSVIGE GSLGNQAQGQ NFGRPKNSRV PRVHNEEYSD 540 GDTVRPGRGF DDFNDEDDDI DNYELDTNNK NSAQSGSIDF SEFEGSESED IEGSDNSSHG 600 RRRTKSSYNK GLSFGSDDEL GLSSDVDDVD QTFGSRQGKL SKLSSGRRDF HRRGNFDIED 660 DSVSGSESDN DDFQSNKNRL RRPKENNFKG RGSLNFTRDT QFESSGMKGG RRNSFNNDFD 720 RSARGSHGSN KGFRGNDFDS QRMSNRGGDK QGFKGGPRRE GFGKSGGRNS FNDDFDKSAG 780 GSRGNNKGFR GNDFDGQRRS NRGADAHNFK GPRREGFGKQ QRGGVNEYGR DKDRGFDDYR 840 NSRRKRKLSD KLGPEWSKGE LERFYDAYRK YGKDWRKVAA AVRNRSVEMV EALYNMNRAY 900 LSLPEGTASV VGLKAMMTDH YNVMEGSDSE RESNDALGFS RKPQKRKLGK DQLSASKDAF 960 QSHSSASHEG CLSLLKRRRL DGGQPRAVGK RTPRFPVSYA YKKDDRDTYV SPIKKGRRSE 1020 GDNDDEVAHV AALLTEASQR GGSPQISQTP YRRPVHVKSS SVQSSERMHP PRGKARANLR 1080 DPSMDEDWLE GSIGSKGAET GDYARDSLEG VGTVEINWKG KKFYGKKEKA KDIGNHQFDD 1140 GGEACSGTEE GLNVSSRGKD DIEVSNTKGE RFSPQSQRKR SKKLYFGDES SCLDALQTLA 1200 DLSLMMPEST MESGSSVQLK EEGTNLDVED KFSVPEATST SQSRNKNKIP SAKHRVPFAI 1260 SGVEGTNSKK SKLGREPAFD ITAVSESEQQ LQSTTKTWKR KRKSSVSKIS NADAPIDSNL 1320 NEPLKTEAFG EEENKPVTKG KRTNQSSTPS KQWKSTRSLE GSLNSDYRRT GTDLTVTTAQ 1380 APTSNHVNLP TKRISRRKMY IPRTLHPKEK SSEKKLKNQL NIRSSSAQDR ALYLKEKTSC 1440 CLSSHLVRRW CTFEWFYSAL DYPWFAKREF EEYLNHVGLG HIPRLTRVEW GVIRSSLGKP 1500 RRFSEHFLHE EREKLKQYRE SVRKHYAELR TGDREGLPTD LARPLSVGQR VIALHPKTRE 1560 VHDGSVLTVD HDKCRVQFDR PDIGVEFVMD VDCMPLNPLD NMPEALRRQN FAFDKFSLTS 1620 MEANKNGNLN FGGPHLEKAT SPVNTSVKQG KGDSNHTTSQ PKAASADIGR AQAQQTTYSQ 1680 PGMVVAHNQA RDADIRALSE LTRALDKKEA LLMELRNTNN NILENQNSGE CSLKDSEPFK 1740 KHYATVSSAL LNLRQRNTYP ANSLPPWLKQ PANSTVYGGL PSSFDSSISQ ESGSSVAEIV 1800 EVSRSKAHMM VNAAIQAMSS RKGGEDAYVR IREALDSIDN QHLPSDSRLS LNRSQEQVNG 1860 NLGHRNQLIS STSDPNFTSD SPGPKPNTDT EKTEAQVLSD VISACVMAVH MIQTCTERQY 1920 PPAVVAQVLD YAVTSLHPRC PQNVGIYREI QMCMGRIKTQ ILALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1967 aa Download sequence

MKSKLLTFVV QHLSPPLIHG GFNTIVENSL SLSDSFPEMA QTPHSLLLLK RLSRCSPNLN  60
PPPAFLSLLK PFSTSPTPIS SLEPKPSSLS ARLSFVFDQI DAIEKERSEK DQTLQKIRAW  120
RESKKSQNNP ELGLGVVSDS ENNAKLISSD SVSSESERFE TPVAAKKEVE VVHPWPEWIE  180
LMERLVQQNY FDHRRNDEDR MIQDIGFNAS EAVLAAEEDA QGVDFKDFKT VQTACLNFGK  240
DRFDIMRSLS RQDIQVLVGF GCPSTDKKVV FSSKLLRKHT HLDEGDVCSS CSLRNSCERA  300
YLITNKEDEA RTIDIMRVLL AYGFDPVNGS VVNKSLLKQK SVKTVVRKLL HQVVKLSSVP  360
IDPNLPPPVI KKPPPKVKQP PPPPRRRVGR DDIEMKKGDW LCSKCDFMNF AKNTICLQCD  420
AKRPKRQLLP GEWECPGRNM ACFHCDCKRP PDEYLENKVQ EMQRGPRTRM EKTAVLHGDS  480
NAWNFDFDDN ESDGADVAAF EYADSSVIGE GSLGNQAQGQ NFGRPKNSRV PRVHNEEYSD  540
GDTVRPGRGF DDFNDEDDDI DNYELDTNNK NSAQSGSIDF SEFEGSESED IEGSDNSSHG  600
RRRTKSSYNK GLSFGSDDEL GLSSDVDDVD QTFGSRQGKL SKLSSGRRDF HRRGNFDIED  660
DSVSGSESDN DDFQSNKNRL RRPKENNFKG RGSLNFTRDT QFESSGMKGG RRNSFNNDFD  720
RSARGSHGSN KGFRGNDFDS QRMSNRGGDK QGFKGGPRRE GFGKSGGRNS FNDDFDKSAG  780
GSRGNNKGFR GNDFDGQRRS NRGADAHNFK GPRREGFGKQ QRGGVNEYGR DKDRGFDDYR  840
NSRRKRKLSD KLGPEWSKGE LERFYDAYRK YGKDWRKVAA AVRNRSVEMV EALYNMNRAY  900
LSLPEGTASV VGLKAMMTDH YNVMEGSDSE RESNDALGFS RKPQKRKLGK DQLSASKDAF  960
QSHSSASHEG CLSLLKRRRL DGGQPRAVGK RTPRFPVSYA YKKDDRDTYV SPIKKGRRSE  1020
GDNDDEVAHV AALLTEASQR GGSPQISQTP YRRPVHVKSS SVQSSERMHP PRGKARANLR  1080
DPSMDEDWLE GSIGSKGAET GDYARDSLEG VGTVEINWKG KKFYGKKEKA KDIGNHQFDD  1140
GGEACSGTEE GLNVSSRGKD DIEVSNTKGE RFSPQSQRKR SKKLYFGDES SCLDALQTLA  1200
DLSLMMPEST MESGSSVQLK EEGTNLDVED KFSVPEATST SQSRNKNKIP SAKHRVPFAI  1260
SGVEGTNSKK SKLGREPAFD ITAVSESEQQ LQSTTKTWKR KRKSSVSKIS NADAPIDSNL  1320
NEPLKTEAFG EEENKPVTKG KRTNQSSTPS KQWKSTRSLE GSLNSDYRRT GTDLTVTTAQ  1380
APTSNHVNLP TKRISRRKMY IPRTLHPKEK SSEKKLKNQL NIRSSSAQDR ALYLKEKTSC  1440
CLSSHLVRRW CTFEWFYSAL DYPWFAKREF EEYLNHVGLG HIPRLTRVEW GVIRSSLGKP  1500
RRFSEHFLHE EREKLKQYRE SVRKHYAELR TGDREGLPTD LARPLSVGQR VIALHPKTRE  1560
VHDGSVLTVD HDKCRVQFDR PDIGVEFVMD VDCMPLNPLD NMPEALRRQN FAFDKFSLTS  1620
MEANKNGNLN FGGPHLEKAT SPVNTSVKQG KGDSNHTTSQ PKAASADIGR AQAQQTTYSQ  1680
PGMVVAHNQA RDADIRALSE LTRALDKKEA LLMELRNTNN NILENQNSGE CSLKDSEPFK  1740
KHYATVSSAL LNLRQRNTYP ANSLPPWLKQ PANSTVYGGL PSSFDSSISQ ESGSSVAEIV  1800
EVSRSKAHMM VNAAIQAMSS RKGGEDAYVR IREALDSIDN QHLPSDSRLS LNRSQEQVNG  1860
NLGHRNQLIS STSDPNFTSD SPGPKPNTDT EKTEAQVLSD VISACVMAVH MIQTCTERQY  1920
PPAVVAQVLD YAVTSLHPRC PQNVGIYREI QMCMGRIKTQ ILALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	941	948	RKPQKRKL
2	976	980	KRRRL
3	1396	1417	RRKMYIPRTLHPKEKSSEKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein