PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0006018.1_g350.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 294aa    MW: 32790 Da    PI: 4.6932
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0006018.1_g350.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081445132
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                               +g W++eEde+l ++++++G g+W+++++   
  Pav_sc0006018.1_g350.1.mk 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAE 45
                               678************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAEEMKEK KSMDCSELKE  60
CLPMPEHEQG LLTIPAMSSS QGPTFLVNDS NYIDGAGVLT QASRAFDSLP YFEFQTGIEP  120
SGYNSDLVSN QYHPTNVRPH FNQPHNTTYE TSSNFGFTSM PSLANSDHGS MSGTDFSDNS  180
ASRLSSFFMN EVKECSSNSS NVSSYAAGFH MNNSNNNNNV VENAAFSWDT DNKLDSLFQF  240
HANGIKSEEL IKPDSWQQGQ QLLHAQNSVD FNSYPLTSLS EDLTGANFDV FQHI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-23MYB family protein