PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0004527.1_g080.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 650aa MW: 71169.2 Da PI: 5.9107

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0004527.1_g080.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.9	7.7e-07	12	51	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ + ++++ l+C+ ++ lC C ++ H+ H Pav_sc0004527.1_g080.1.mk 12 VPCDFCTDQPAVLYCKADSAKLCLFCDQHVHSAnllsrkH 51 57***************************99555555556 PP
2	zf-B_box	24.3	6.7e-08	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ +++++ C +++ lC++C H + H+++pl Pav_sc0004527.1_g080.1.mk 54 SQICDNCASEPVSVRCSTDNLVLCQECDWDAHGScsvsaaHDRIPL 99 689*************************999954889999988875 PP
3	CCT	63.7	5.6e-22	443	486	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktR+++K+irYesRKa+A++R+R+KGrFvk++ Pav_sc0004527.1_g080.1.mk 443 RGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRIKGRFVKAT 486 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MASPKSRCGE GVPCDFCTDQ PAVLYCKADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC 60 ASEPVSVRCS TDNLVLCQEC DWDAHGSCSV SAAHDRIPLQ GFSGCPSALQ LASLLGLDLH 120 DKNLPGRPDP QLQNWDMGMP SLDSSWSGMG LQDLMVPNHN QNVVVYPKDE LMVKRESGGG 180 ISWKQKQGIQ KQLVELLKRD LDGGGGGGGG CGDGGENLVV PRTPTRSGWQ EDNGNGNVEG 240 LEPLDLGNRN GGVDGVVASA ATSQPLLQPQ APFTSLLMMP EENRGIVDGD MLWNGNPHGQ 300 SSQIWDFHLG RSRDQEESGP LEVTYGSNDS GFMIKNFGEL MKETSLTETK MFRDMYQMNC 360 PVGHDDIKFN NNSNNPASSQ GPATSESKNI PVGRPSLGSA FGEDKGSGAS TDLNFMEQSF 420 LMRGDSLRTV GTKADMELLA QNRGNAMLRY KEKKKTRRYD KHIRYESRKA RADTRKRIKG 480 RFVKATEAPD ELIDFFFCMM GCRVLLGFLL AVAAVIASVD CNSEGDILNA WKTQLTDPNN 540 VLQSWDPTLI NPCTWFHVSC NSENSVTRVD LGRANLSGPL IPELGNLTNL QYLELNSNRF 600 TGPLPSVVLE LVRFGQLKHL DVSDNLLAGT VHRTNSTRFR VTTIIQDPQA

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MASPKSRCGE GVPCDFCTDQ PAVLYCKADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC  60
ASEPVSVRCS TDNLVLCQEC DWDAHGSCSV SAAHDRIPLQ GFSGCPSALQ LASLLGLDLH  120
DKNLPGRPDP QLQNWDMGMP SLDSSWSGMG LQDLMVPNHN QNVVVYPKDE LMVKRESGGG  180
ISWKQKQGIQ KQLVELLKRD LDGGGGGGGG CGDGGENLVV PRTPTRSGWQ EDNGNGNVEG  240
LEPLDLGNRN GGVDGVVASA ATSQPLLQPQ APFTSLLMMP EENRGIVDGD MLWNGNPHGQ  300
SSQIWDFHLG RSRDQEESGP LEVTYGSNDS GFMIKNFGEL MKETSLTETK MFRDMYQMNC  360
PVGHDDIKFN NNSNNPASSQ GPATSESKNI PVGRPSLGSA FGEDKGSGAS TDLNFMEQSF  420
LMRGDSLRTV GTKADMELLA QNRGNAMLRY KEKKKTRRYD KHIRYESRKA RADTRKRIKG  480
RFVKATEAPD ELIDFFFCMM GCRVLLGFLL AVAAVIASVD CNSEGDILNA WKTQLTDPNN  540
VLQSWDPTLI NPCTWFHVSC NSENSVTRVD LGRANLSGPL IPELGNLTNL QYLELNSNRF  600
TGPLPSVVLE LVRFGQLKHL DVSDNLLAGT VHRTNSTRFR VTTIIQDPQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-101	CO-like family protein