PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_sc0004416.1_g110.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 25399.1 Da PI: 7.139 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.3e-19 | 23 | 78 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF++++ p+ ++r+eL+++lgL+ qVk WFqN+R +k Pav_sc0004416.1_g110.1.br 23 KKTHRRHTQHQIQEMEALFKECPCPKPKQRKELSRELGLEPFQVKWWFQNKRNHMK 78 678889**********************************************9887 PP | |||||||
2 | START | 37.1 | 7.5e-13 | 128 | 204 | 2 | 69 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 + +a++el+++a+ +ep+W++s + n+de++++f++ ++ ea+r+s+vv m++ +lve+l+d+ Pav_sc0004416.1_g110.1.br 128 IVVAAMEELIRMAQMGEPLWMTSLdgntTVVNEDEYIRTFPRVAPkpnnhFKCEASRESAVVVMNHSNLVEILMDVV 204 56799*******************88888889********9977799999************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence |
MINTKFGSNN PEGGFGDQDP RPKKTHRRHT QHQIQEMEAL FKECPCPKPK QRKELSRELG 60 LEPFQVKWWF QNKRNHMKTQ LELHENTQLR NENEKLRADN MRYREALGSA SCPNCGGPTT 120 IREMIIEIVV AAMEELIRMA QMGEPLWMTS LDGNTTVVNE DEYIRTFPRV APKPNNHFKC 180 EASRESAVVV MNHSNLVEIL MDVVTLFTCV INIEQICYI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05230.4 | 1e-54 | HD-ZIP family protein |