PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0003853.1_g010.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 374aa MW: 43240.4 Da PI: 9.4332

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0003853.1_g010.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	3e-21	42	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn+YA +GF +r ++ + + ++ei +++fvC k+g ++++++ +++r+r +r++Ckak++v k++ ++k+ ++ + + Pav_sc0003853.1_g010.1.br 42 NFYNRYAFLAGFGIRLHSIFRGTYKKEILRKEFVCCKQGAYRKDETR--ERKRQRGISRCNCKAKIVVVKTNgSKKYAISLFAE 123 6************************************99998877..9999*********9999998******* PP FAR1 84 eHnHela 90 HnH+++ Pav_sc0003853.1_g010.1.br 124 GHNHKMT 130 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MSGGSESDDC ATANGMVYIP EVRNEETPAV GMKFDSLDFA YNFYNRYAFL AGFGIRLHSI 60 FRGTYKKEIL RKEFVCCKQG AYRKDETRER KRQRGISRCN CKAKIVVVKT NGSKKYAISL 120 FAEGHNHKMT DSERVHLLRS HRRISDSTKV LTKQLGSVNI PIHQKVSIFE VQSGGMDKIG 180 FIKKDIYNLE CSVNGKLRNH DVELVTEYFM AEQKKKNEAF YFKIEGDGED KFSRCFWADA 240 TSRRAYRLYG DVVVFDTTFN TNRYDLTFAP ILGVNNHGQT IVLACTFLSK ETTESFIWMF 300 EEFKKAMQGG EPKTIITDQD AAITRAISIA FPTTFHRLCI WHITSKFRVK LPHSAYKEYW 360 REFQKAIWDT DNKD

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MSGGSESDDC ATANGMVYIP EVRNEETPAV GMKFDSLDFA YNFYNRYAFL AGFGIRLHSI  60
FRGTYKKEIL RKEFVCCKQG AYRKDETRER KRQRGISRCN CKAKIVVVKT NGSKKYAISL  120
FAEGHNHKMT DSERVHLLRS HRRISDSTKV LTKQLGSVNI PIHQKVSIFE VQSGGMDKIG  180
FIKKDIYNLE CSVNGKLRNH DVELVTEYFM AEQKKKNEAF YFKIEGDGED KFSRCFWADA  240
TSRRAYRLYG DVVVFDTTFN TNRYDLTFAP ILGVNNHGQT IVLACTFLSK ETTESFIWMF  300
EEFKKAMQGG EPKTIITDQD AAITRAISIA FPTTFHRLCI WHITSKFRVK LPHSAYKEYW  360
REFQKAIWDT DNKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-67	FAR1 family protein