PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003845.1_g090.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 306aa    MW: 33681.9 Da    PI: 7.2347
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003845.1_g090.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.5e-143680147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               r +WT eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
  Pav_sc0003845.1_g090.1.mk 36 RESWTDEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 80
                               789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MNSTSSNNPQ SMGAASTPSD GSGKKVRKPY TITKSRESWT DEEHDKFLEA LQLFDRDWKK  60
IEDFVGSKTV IQIRSHAQKY FLKVQKSGTT AHVPPPRPKR KAAHPYPQKA SKNVLVPLQA  120
SIAYPSSMNS IASTYSPWDE TSIMINPASN QILLSHEEFT SFQGTEALIM GYGVTDSADI  180
RSKGLARINE CSLSGIESSS RTLPSSEVPE QGKQAPLLHG IPDFSEVYSF IGSVFDPDSK  240
GHAQKLREMD PINFETVLLL MRNLSINLSS PDFEPIREVL VSYDVNTKTA VAAGIVTTKL  300
NNDLSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-115MYB_related family protein