PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0003828.1_g010.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 557aa MW: 66024.4 Da PI: 7.5362

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0003828.1_g010.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.6e-20	40	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fYn+YAk++GFsvr+sk+kk+k+ ge++++++vC keg+ +e+ +k +++ +r+r++ +Ckakl+v + +++v+ Pav_sc0003828.1_g010.1.br 40 EFYNDYAKDAGFSVRISKEKKKKEIGEVVWKRYVCFKEGEIDETWRKkkdseSTQIERERSNVCENCKAKLTVVYD-GFNFVVK 122 6************************************98876555556667888889999999****999.999 PP FAR1 80 kleleHnHela 90 ++ +eH+H+la Pav_sc0003828.1_g010.1.br 123 TFIEEHTHPLA 133 *******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MANALDEWMS SKDEFYIPQV RDDKKPKAGL TFKSLDETYE FYNDYAKDAG FSVRISKEKK 60 KKEIGEVVWK RYVCFKEGEI DETWRKKKDS ESTQIERERS NVCENCKAKL TVVYDGFNFV 120 VKTFIEEHTH PLATPSRVHL LRSHRGVSDT KIKLVKKFSN VNIPLYQQFE LDEREKIKGH 180 DAEMLYEYFK SEEDKDSDFF FKFETDNNNR MTRCFWVDSV ARKAYTHFGD VVVFDTTYNT 240 NRYAMIFAPL VGVNHHGQTT IFGCGFLSNE TFDSFVWLLE TWLEAMKVPP IVIITDQDQA 300 MTKAIAQVLP NTFNRYCVWH ILNKFQEKMC YFAHHNYYAL FKTAIWESET VEEFEKSWYE 360 ALEISQPSSK DWFEEMYKLR GTWIPAYVKQ YFSAGMSSSQ RAESMHAFFK CYCSKSNSLM 420 DFVTRFNRAL AHLRHEELVA DHGDLNEKPN IKLGMPMENQ MVGMYTKKYF YKFQKELLES 480 NSYMVNVTGE DENCWIYKIQ KFDANSRVRT LVHDKISNLL KCSCRLFDFE GISCKHMLAF 540 FRVKQIMQLP KEYIMRR

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MANALDEWMS SKDEFYIPQV RDDKKPKAGL TFKSLDETYE FYNDYAKDAG FSVRISKEKK  60
KKEIGEVVWK RYVCFKEGEI DETWRKKKDS ESTQIERERS NVCENCKAKL TVVYDGFNFV  120
VKTFIEEHTH PLATPSRVHL LRSHRGVSDT KIKLVKKFSN VNIPLYQQFE LDEREKIKGH  180
DAEMLYEYFK SEEDKDSDFF FKFETDNNNR MTRCFWVDSV ARKAYTHFGD VVVFDTTYNT  240
NRYAMIFAPL VGVNHHGQTT IFGCGFLSNE TFDSFVWLLE TWLEAMKVPP IVIITDQDQA  300
MTKAIAQVLP NTFNRYCVWH ILNKFQEKMC YFAHHNYYAL FKTAIWESET VEEFEKSWYE  360
ALEISQPSSK DWFEEMYKLR GTWIPAYVKQ YFSAGMSSSQ RAESMHAFFK CYCSKSNSLM  420
DFVTRFNRAL AHLRHEELVA DHGDLNEKPN IKLGMPMENQ MVGMYTKKYF YKFQKELLES  480
NSYMVNVTGE DENCWIYKIQ KFDANSRVRT LVHDKISNLL KCSCRLFDFE GISCKHMLAF  540
FRVKQIMQLP KEYIMRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	88	KKKKEIGEVVWKRYVCFKEGEIDETWRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1 family protein