PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_sc0003613.1_g010.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 261aa MW: 29942.5 Da PI: 8.1863 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.9 | 1.3e-21 | 84 | 174 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 +fY++YA +GFs+r+s+ ++s + g ++ r++vCskeg+r+++ ++ ++ r++r+etr +C+a++ vk ++ + vtk++ Pav_sc0003613.1_g010.1.br 84 RFYCNYALAIGFSIRRSRLRRS-EGGVVMGRQWVCSKEGSRSKKWTNrDNMVRTPRKETRENCHATFAVKYCPkRDAYIVTKFV 166 5********************9.8999***************9988846677889*****************999********* PP FAR1 83 leHnHela 90 +eH+H la Pav_sc0003613.1_g010.1.br 167 TEHSHRLA 174 *****997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence |
MDAEASKTNG IQGQNSVPNS EGYFAEAESL EETENAPSLQ ILDSRTEEIT EKSGQFEYDG 60 LNFQNMSIAD LAEREFAKFE EAERFYCNYA LAIGFSIRRS RLRRSEGGVV MGRQWVCSKE 120 GSRSKKWTNR DNMVRTPRKE TRENCHATFA VKYCPKRDAY IVTKFVTEHS HRLANSREVP 180 FLRSHRCVTE SNIAQSMSMR KASIKTNRTY DYMVDQAGGY MKVGFTSKDL YNRIDFERRQ 240 VVLDGDAEAA ISYMNAWTLG K |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-17 | FAR1 family protein |