PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003492.1_g200.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 896aa    MW: 103308 Da    PI: 7.8089
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003492.1_g200.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.3e-171769456
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               + ++t+eq++ Le+ F +n+++  e++  LAk+lg++ rqV +W+qN+Ra++k
  Pav_sc0003492.1_g200.1.mk 17 KKRLTQEQVNLLERSFTSNSKLEPERKLLLAKQLGIPPRQVAIWYQNKRARWK 69
                               5679************************************************9 PP
2HD-ZIP_I/II106.12.7e-3416107293
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                +k+rl++eqv+lLE+sF++++kLeperK  la++Lg+ prqva+W+qn+RAR+kt+ lE +y+a+++++++  +e++rLek+ve
  Pav_sc0003492.1_g200.1.mk  16 NKKRLTQEQVNLLERSFTSNSKLEPERKLLLAKQLGIPPRQVAIWYQNKRARWKTQSLELEYNAIQAKLETALAEKRRLEKDVE 99 
                                79********************************************************************************** PP

                HD-ZIP_I/II  86 eLreelke 93 
                                +Lr elk+
  Pav_sc0003492.1_g200.1.mk 100 RLRGELKK 107
                                ***99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    
MEFFHTPNHK HSFQHNKKRL TQEQVNLLER SFTSNSKLEP ERKLLLAKQL GIPPRQVAIW  60
YQNKRARWKT QSLELEYNAI QAKLETALAE KRRLEKDVER LRGELKKAHD LVLVLNQTQE  120
LPAHPMICSM FNSSSAEEGV GSSSLQQHED QVSDHEVKQL EELYACLIGM QISFSIHMHM  180
GEYKEKSPIP GIPLELLPSL TSEEPANQPT GSAQTRLSKT LEPKDLHGLR LRFSNSWRHG  240
PDPNRHSHSL RGQPDIRRAV GAMKEIAVDL ERDNQFERVK ELENAVIELL GTHEDCSHFS  300
STIQSVGEKY QPGPQVLGIF FFMHVSHSMT LLILVPISTY LYICYFCNPS KLMCVYYLRS  360
QFTDFDQLFK NEVAMLKANS SSDPQNHPLM RQFREAVWNV HHAGEPMPGE EQEDIVMTSN  420
QCNILNVTCP LSGKPITELQ HPVRSVLCKH VYDKGSIMHY LRSKNTRCPV AACPKVLQAD  480
KVVCDPLLLV EIDELRAMKE QTVMTDVIED FTELDEDSLL CAFPRMVLYR VRRPLSKTRN  540
TERRRHKDKA AMAFTRARLT TLPMLPSVFS ITLKPLLPIP HPLPPPMRSL LIPFASLSAS  600
QTDHDPSAPS VPSSPRKSSQ LWKPMCLYYT QGKCTMMEDP THMEKFNHDC SRDLQVTNYM  660
SNRICSQNLD YFLVLDLEGK IEILEFPVLM IDANTMDVVD FFHRFVRPSE MSEKRINEYI  720
EGKYGKFGVD RVWHDTAIPF KDVLQQFEAW LIQHQLWEEE LGGCLNRAAF VTCGNWDLKT  780
KVPEQCKVSR MKLPSYFMEW INLKDVYLNF YKRKATGMMT MMKELHLPLL GSHHLGFDDS  840
KNIARVVQHM LADGALIQIT ARRNPDSPEK VEFLFKNRIR TVTYLVTIPR NLPPSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.14e-31HD-ZIP family protein