PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003363.1_g040.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 309aa    MW: 35302.4 Da    PI: 8.5998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003363.1_g040.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.32.2e-1797184189
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                +fYn Y  ++GF +  s++++ + +g++t++++vC k+g++ +++ +  ++rr+r  trtgCk kl + k + ++k  +  +++
  Pav_sc0003363.1_g040.1.br  97 NFYNMYVAKAGFGIWCSTMRTCTFTGQVTRKEYVCCKQGYALTSTIS--RRRRQRGCTRTGCKVKLAILKVNeKNKDTIVGFNK 178
                                6*****************************************99888..9*****************98887799********* PP

                       FAR1  84 eHnHel 89 
                                 HnH++
  Pav_sc0003363.1_g040.1.br 179 VHNHDM 184
                                ****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGNLLELGNK GQDLVRTLMR NKGILDFIIS SLWLGFWGRD IRQSLSNVET GVELESADRL  60
NCKNCEMECE GQVTPEISSE LKPKLGLEFD CYEDVFNFYN MYVAKAGFGI WCSTMRTCTF  120
TGQVTRKEYV CCKQGYALTS TISRRRRQRG CTRTGCKVKL AILKVNEKNK DTIVGFNKVH  180
NHDMTIVDKV HLLRSHRNLT ESTKAYSAHM SKVNIPVHKQ VSLLEVQVGG LENVGFVRRD  240
VYNYARDVRG EVIGHDAELL KEHFLAEQGK NESFYFNMEV DLEGRMGNVF WANTRSRRAY  300
GFFWGCGGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144170RRRRQRGCTRTGCKVKLAILKVNEKNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-25FAR1 family protein