PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003201.1_g120.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 321aa    MW: 35278.6 Da    PI: 9.4604
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003201.1_g120.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.53e-30154209258
                  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                 p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh hAlrRpRg+gGrF
  Pav_sc0003201.1_g120.1.mk 154 GPIYVNAKQYHGIIRRRQSRAKAVMENRA-ATLRKPYMHESRHLHALRRPRGCGGRF 209
                                69***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MAMQTVYFKE HEGISNPMGQ LSSALSGPWW SAFGSQPSYG ESCGQSKPFT MEHTSSGDQL  60
TATKLTGRGT EQGLNKGNTN QFTIFPGDGQ KSQAAISLQS SPQKYRAHFE LGFSQPMICA  120
KYPYMDQCYG LFSTYGPQIS GRIMLPLNLT ADEGPIYVNA KQYHGIIRRR QSRAKAVMEN  180
RAATLRKPYM HESRHLHALR RPRGCGGRFL NTKTMNIGKN ETEGTQVGDG QLFRHSGSHS  240
SELLQSESGT LNSSKETNGS SSNISGSEVT SVYSRRDLDR FSINHLGPSV HSLSDMMDSV  300
RGMVIPTKWV AAGDNCCNLK V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-67NF-YA family protein