PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0003135.1_g360.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 492aa    MW: 53435.1 Da    PI: 7.803
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0003135.1_g360.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.26e-38672312135
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 
                                 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                    
  Pav_sc0003135.1_g360.1.br  67 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnnsfpdtpkqlsdekrasce 150
                                689*************************************************************99999999999888888777 PP

                        TCP  66 ..........ssssasec......eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                                          +             + ++++++++n+s++ + +++a+s++s++s+ s l+l++ e r kar+rarert++++ +
  Pav_sc0003135.1_g360.1.br 151 hgfdsaevelE------GhghgdpNYHQNQNQTQNHSQHLSLSKSACSSNSETSKGSGLSLSRsEIRVKARERARERTAKDKEK 228
                                74443333331......0333434667777777777888899999999999999999******999************999887 PP

                        TCP 133 knk 135
                                +++
  Pav_sc0003135.1_g360.1.br 229 ESN 231
                                754 PP
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    
MEVEEIQAQA CKFPRIGNGS SRATNPAADD EDQDPSCLDL KRAATADAGN RLRGWHHSRI  60
IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA  120
ADAIAELPSL NNSFPDTPKQ LSDEKRASCE HGFDSAEVEL EGHGHGDPNY HQNQNQTQNH  180
SQHLSLSKSA CSSNSETSKG SGLSLSRSEI RVKARERARE RTAKDKEKES NESASHIAHH  240
HQQNSSNMNN SISQSASFTE LLTGGIGTNS SNNNNSPTAA AHQQQNHGGG GEPILFHKAA  300
AAGGGPMDYF SSGLLGLSSS TRTHHTSGFS SQIHLGINSI PQTMSVVSPF SVSGDHHHNH  360
NPELQHFSFV PDHLIPVTTS SQPGNGGDYN LNFSISSSGG LAGFNRGTLQ SNSSSSPSLL  420
PHHLQRFSPI DGSSNVPFFI GAAAAPTMEN HHHHHHHHQQ HQQQFPAGFD RRLQHPYGDG  480
SRHSDHKGKA KN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.11e-43TCP family protein